Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC004790.2-201ENST00000623588 572 ntBASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 LINC00628-201ENST00000628516 1289 ntBASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 AC007967.3-201ENST00000434308 558 ntBASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 AP005018.1-201ENST00000525475 301 ntBASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 AD001527.2-201ENST00000622994 785 ntBASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL17A1Q9UMD9 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
COL17A1Q9UMD9 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
COL17A1Q9UMD9 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
COL17A1Q9UMD9 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
COL17A1Q9UMD9 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
COL17A1Q9UMD9 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC27.28■■□□□ 1.96
COL17A1Q9UMD9 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC27.28■■□□□ 1.96
COL17A1Q9UMD9 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC27.28■■□□□ 1.96
COL17A1Q9UMD9 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC27.28■■□□□ 1.96
COL17A1Q9UMD9 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC27.28■■□□□ 1.96
COL17A1Q9UMD9 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
COL17A1Q9UMD9 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
COL17A1Q9UMD9 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC27.27■■□□□ 1.96
COL17A1Q9UMD9 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL17A1Q9UMD9 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC27.27■■□□□ 1.96
COL17A1Q9UMD9 FAM86GP-201ENST00000448322 971 ntBASIC27.27■■□□□ 1.96
COL17A1Q9UMD9 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC27.27■■□□□ 1.96
COL17A1Q9UMD9 OARD1-208ENST00000469104 704 ntTSL 2 BASIC27.27■■□□□ 1.96
COL17A1Q9UMD9 ARTN-206ENST00000472435 402 ntTSL 3 BASIC27.27■■□□□ 1.96
COL17A1Q9UMD9 AL589182.2-201ENST00000619332 1049 ntBASIC27.27■■□□□ 1.96
COL17A1Q9UMD9 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC27.27■■□□□ 1.96
COL17A1Q9UMD9 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL17A1Q9UMD9 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC27.27■■□□□ 1.96
COL17A1Q9UMD9 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL17A1Q9UMD9 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
COL17A1Q9UMD9 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
COL17A1Q9UMD9 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.96
COL17A1Q9UMD9 OR8S1-201ENST00000310194 1080 ntBASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 TERF1P3-201ENST00000505638 1227 ntBASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 RIN3-211ENST00000557762 517 ntTSL 3 BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC27.26■■□□□ 1.95
COL17A1Q9UMD9 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 NAA60-208ENST00000570819 833 ntTSL 2 BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 LINC00602-201ENST00000629776 2065 ntBASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 AC099343.3-201ENST00000605834 2503 ntBASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 ADH5P3-201ENST00000433842 1137 ntBASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 RHOQP3-201ENST00000437982 621 ntBASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 RNA5SP421-201ENST00000516864 134 ntBASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 NOP2-220ENST00000545915 630 ntTSL 2 BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL17A1Q9UMD9 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
COL17A1Q9UMD9 NFYC-AS1-201ENST00000606277 1687 ntBASIC27.24■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms