Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 C2orf69P3-201ENST00000565542 1120 ntBASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 AC080080.1-201ENST00000625121 2420 ntBASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 AC008550.1-201ENST00000511500 884 ntBASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
LIMA1Q9UHB6 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 AC133963.1-201ENST00000504166 1679 ntBASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 LINC00167-201ENST00000530583 1419 ntBASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 EGLN1P1-201ENST00000531623 762 ntBASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 AL138688.1-201ENST00000624851 1594 ntBASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMA1Q9UHB6 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 AL023806.1-201ENST00000603994 1649 ntBASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMA1Q9UHB6 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
LIMA1Q9UHB6 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms