Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC29.81■■■□□ 2.36
IFT140Q96RY7 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
IFT140Q96RY7 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
IFT140Q96RY7 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC29.81■■■□□ 2.36
IFT140Q96RY7 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC29.81■■■□□ 2.36
IFT140Q96RY7 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC29.81■■■□□ 2.36
IFT140Q96RY7 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
IFT140Q96RY7 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
IFT140Q96RY7 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC29.81■■■□□ 2.36
IFT140Q96RY7 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
IFT140Q96RY7 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
IFT140Q96RY7 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC29.8■■■□□ 2.36
IFT140Q96RY7 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC29.8■■■□□ 2.36
IFT140Q96RY7 POLD4-211ENST00000539074 714 ntTSL 3 BASIC29.8■■■□□ 2.36
IFT140Q96RY7 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC29.8■■■□□ 2.36
IFT140Q96RY7 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC29.8■■■□□ 2.36
IFT140Q96RY7 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC29.8■■■□□ 2.36
IFT140Q96RY7 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
IFT140Q96RY7 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
IFT140Q96RY7 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC29.8■■■□□ 2.36
IFT140Q96RY7 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC29.8■■■□□ 2.36
IFT140Q96RY7 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC29.8■■■□□ 2.36
IFT140Q96RY7 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
IFT140Q96RY7 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
IFT140Q96RY7 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC29.8■■■□□ 2.36
IFT140Q96RY7 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
IFT140Q96RY7 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
IFT140Q96RY7 GSAP-205ENST00000430584 600 ntTSL 5 BASIC29.8■■■□□ 2.36
IFT140Q96RY7 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC29.8■■■□□ 2.36
IFT140Q96RY7 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC29.8■■■□□ 2.36
IFT140Q96RY7 AC068137.2-201ENST00000605408 478 ntBASIC29.8■■■□□ 2.36
IFT140Q96RY7 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
IFT140Q96RY7 AL121761.2-201ENST00000598007 1648 ntBASIC29.79■■■□□ 2.36
IFT140Q96RY7 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
IFT140Q96RY7 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
IFT140Q96RY7 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
IFT140Q96RY7 GID4-202ENST00000376345 1391 ntTSL 3 BASIC29.79■■■□□ 2.36
IFT140Q96RY7 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
IFT140Q96RY7 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC29.79■■■□□ 2.36
IFT140Q96RY7 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC29.79■■■□□ 2.36
IFT140Q96RY7 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC29.79■■■□□ 2.36
IFT140Q96RY7 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC29.79■■■□□ 2.36
IFT140Q96RY7 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC29.79■■■□□ 2.36
IFT140Q96RY7 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
IFT140Q96RY7 GK-202ENST00000378941 458 ntTSL 3 BASIC29.79■■■□□ 2.36
IFT140Q96RY7 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC29.79■■■□□ 2.36
IFT140Q96RY7 MIR661-201ENST00000384842 89 ntBASIC29.79■■■□□ 2.36
IFT140Q96RY7 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC29.79■■■□□ 2.36
IFT140Q96RY7 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
IFT140Q96RY7 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
IFT140Q96RY7 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC29.79■■■□□ 2.36
IFT140Q96RY7 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC29.78■■■□□ 2.36
IFT140Q96RY7 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
IFT140Q96RY7 DDT-204ENST00000404092 805 ntTSL 3 BASIC29.78■■■□□ 2.36
IFT140Q96RY7 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC29.78■■■□□ 2.36
IFT140Q96RY7 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC29.78■■■□□ 2.36
IFT140Q96RY7 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
IFT140Q96RY7 AC025580.3-201ENST00000617932 1424 ntBASIC29.78■■■□□ 2.36
IFT140Q96RY7 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC29.78■■■□□ 2.36
IFT140Q96RY7 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC29.77■■■□□ 2.36
IFT140Q96RY7 SNCG-201ENST00000348795 684 ntTSL 2 BASIC29.77■■■□□ 2.36
IFT140Q96RY7 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC29.77■■■□□ 2.36
IFT140Q96RY7 AC103564.2-201ENST00000432853 1299 ntBASIC29.77■■■□□ 2.36
IFT140Q96RY7 GAPDHP21-201ENST00000450301 1010 ntBASIC29.77■■■□□ 2.36
IFT140Q96RY7 AC067863.1-201ENST00000494933 530 ntBASIC29.77■■■□□ 2.36
IFT140Q96RY7 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC29.77■■■□□ 2.36
IFT140Q96RY7 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
IFT140Q96RY7 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC29.77■■■□□ 2.36
IFT140Q96RY7 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC29.77■■■□□ 2.36
IFT140Q96RY7 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC29.77■■■□□ 2.36
IFT140Q96RY7 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC29.77■■■□□ 2.36
IFT140Q96RY7 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
IFT140Q96RY7 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC29.76■■■□□ 2.35
IFT140Q96RY7 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
IFT140Q96RY7 AC093214.1-201ENST00000511688 1107 ntBASIC29.76■■■□□ 2.35
IFT140Q96RY7 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
IFT140Q96RY7 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC29.76■■■□□ 2.35
IFT140Q96RY7 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC29.76■■■□□ 2.35
IFT140Q96RY7 AC132938.6-201ENST00000623828 1655 ntBASIC29.76■■■□□ 2.35
IFT140Q96RY7 AC132938.5-201ENST00000624980 1813 ntBASIC29.76■■■□□ 2.35
IFT140Q96RY7 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
IFT140Q96RY7 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC29.76■■■□□ 2.35
IFT140Q96RY7 AC112907.3-201ENST00000577781 2400 ntBASIC29.75■■■□□ 2.35
IFT140Q96RY7 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
IFT140Q96RY7 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
IFT140Q96RY7 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC29.75■■■□□ 2.35
IFT140Q96RY7 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC29.75■■■□□ 2.35
IFT140Q96RY7 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC29.75■■■□□ 2.35
IFT140Q96RY7 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
IFT140Q96RY7 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
IFT140Q96RY7 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
IFT140Q96RY7 RNA5SP421-201ENST00000516864 134 ntBASIC29.75■■■□□ 2.35
IFT140Q96RY7 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
IFT140Q96RY7 REXO1L3P-201ENST00000622202 1288 ntBASIC29.75■■■□□ 2.35
IFT140Q96RY7 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC29.75■■■□□ 2.35
IFT140Q96RY7 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC29.75■■■□□ 2.35
IFT140Q96RY7 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
IFT140Q96RY7 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC29.75■■■□□ 2.35
IFT140Q96RY7 SNAI3-AS1-205ENST00000568633 2096 ntBASIC29.75■■■□□ 2.35
IFT140Q96RY7 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms