Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.45
VPS13AQ96RL7 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.83■□□□□ 0.45
VPS13AQ96RL7 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VPS13AQ96RL7 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
VPS13AQ96RL7 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.83■□□□□ 0.45
VPS13AQ96RL7 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.83■□□□□ 0.45
VPS13AQ96RL7 AC023141.5-201ENST00000458585 616 ntBASIC17.83■□□□□ 0.45
VPS13AQ96RL7 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.83■□□□□ 0.45
VPS13AQ96RL7 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.83■□□□□ 0.45
VPS13AQ96RL7 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.83■□□□□ 0.45
VPS13AQ96RL7 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS13AQ96RL7 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.83■□□□□ 0.45
VPS13AQ96RL7 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.83■□□□□ 0.45
VPS13AQ96RL7 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 AC022145.2-201ENST00000598203 171 ntBASIC17.83■□□□□ 0.44
VPS13AQ96RL7 AC091812.2-201ENST00000619081 385 ntBASIC17.83■□□□□ 0.44
VPS13AQ96RL7 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 AL024508.2-201ENST00000607749 1894 ntBASIC17.83■□□□□ 0.44
VPS13AQ96RL7 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13AQ96RL7 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 AC012676.1-201ENST00000574705 1949 ntBASIC17.82■□□□□ 0.44
VPS13AQ96RL7 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 KRT18P41-201ENST00000518924 1277 ntBASIC17.82■□□□□ 0.44
VPS13AQ96RL7 AC015911.4-201ENST00000588022 1070 ntBASIC17.82■□□□□ 0.44
VPS13AQ96RL7 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 SDHAP2-201ENST00000455183 2001 ntBASIC17.82■□□□□ 0.44
VPS13AQ96RL7 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13AQ96RL7 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 AC069262.1-201ENST00000539058 672 ntBASIC17.81■□□□□ 0.44
VPS13AQ96RL7 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 MIR6752-201ENST00000618442 71 ntBASIC17.81■□□□□ 0.44
VPS13AQ96RL7 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13AQ96RL7 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms