Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
NPHP3Q7Z494 MAL2-202ENST00000531508 892 ntTSL 3 BASIC24.46■■□□□ 1.51
NPHP3Q7Z494 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC24.46■■□□□ 1.51
NPHP3Q7Z494 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC24.46■■□□□ 1.51
NPHP3Q7Z494 AC239800.4-201ENST00000603712 296 ntBASIC24.46■■□□□ 1.51
NPHP3Q7Z494 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
NPHP3Q7Z494 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
NPHP3Q7Z494 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC24.46■■□□□ 1.51
NPHP3Q7Z494 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
NPHP3Q7Z494 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
NPHP3Q7Z494 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
NPHP3Q7Z494 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
NPHP3Q7Z494 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
NPHP3Q7Z494 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.51
NPHP3Q7Z494 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
NPHP3Q7Z494 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
NPHP3Q7Z494 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
NPHP3Q7Z494 AC096633.1-201ENST00000422446 749 ntBASIC24.45■■□□□ 1.5
NPHP3Q7Z494 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC24.45■■□□□ 1.5
NPHP3Q7Z494 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC24.45■■□□□ 1.5
NPHP3Q7Z494 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC24.45■■□□□ 1.5
NPHP3Q7Z494 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.5
NPHP3Q7Z494 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC24.45■■□□□ 1.5
NPHP3Q7Z494 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC24.45■■□□□ 1.5
NPHP3Q7Z494 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC24.45■■□□□ 1.5
NPHP3Q7Z494 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
NPHP3Q7Z494 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC24.45■■□□□ 1.5
NPHP3Q7Z494 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC24.45■■□□□ 1.5
NPHP3Q7Z494 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
NPHP3Q7Z494 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 PRSS29P-201ENST00000440800 595 ntBASIC24.44■■□□□ 1.5
NPHP3Q7Z494 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 LHX6-205ENST00000464484 666 ntTSL 2 BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 AL032819.2-201ENST00000624543 2162 ntBASIC24.44■■□□□ 1.5
NPHP3Q7Z494 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
NPHP3Q7Z494 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 ARTN-206ENST00000472435 402 ntTSL 3 BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 AC006504.4-201ENST00000592118 1568 ntBASIC24.43■■□□□ 1.5
NPHP3Q7Z494 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC24.43■■□□□ 1.5
NPHP3Q7Z494 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 IGHV3-65-201ENST00000523210 341 ntBASIC24.42■■□□□ 1.5
NPHP3Q7Z494 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 PUS1-205ENST00000535067 838 ntTSL 3 BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 KRT8P47-201ENST00000604727 1398 ntBASIC24.42■■□□□ 1.5
NPHP3Q7Z494 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP3Q7Z494 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC24.42■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms