Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC13.01□□□□□ -0.33
PRKDCP78527 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC13.01□□□□□ -0.33
PRKDCP78527 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
PRKDCP78527 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC13□□□□□ -0.33
PRKDCP78527 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC13□□□□□ -0.33
PRKDCP78527 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
PRKDCP78527 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC13□□□□□ -0.33
PRKDCP78527 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
PRKDCP78527 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC13□□□□□ -0.33
PRKDCP78527 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
PRKDCP78527 CRYGEP-201ENST00000412192 528 ntBASIC13□□□□□ -0.33
PRKDCP78527 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13□□□□□ -0.33
PRKDCP78527 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC13□□□□□ -0.33
PRKDCP78527 AC068137.2-201ENST00000605408 478 ntBASIC13□□□□□ -0.33
PRKDCP78527 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC13□□□□□ -0.33
PRKDCP78527 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
PRKDCP78527 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
PRKDCP78527 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
PRKDCP78527 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
PRKDCP78527 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC13□□□□□ -0.33
PRKDCP78527 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13□□□□□ -0.33
PRKDCP78527 GPR53P-205ENST00000457298 1084 ntBASIC13□□□□□ -0.33
PRKDCP78527 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
PRKDCP78527 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC13□□□□□ -0.33
PRKDCP78527 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC13□□□□□ -0.33
PRKDCP78527 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
PRKDCP78527 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
PRKDCP78527 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
PRKDCP78527 ADM-208ENST00000534464 1640 ntTSL 2 BASIC13□□□□□ -0.33
PRKDCP78527 AC092919.2-201ENST00000623631 1645 ntBASIC13□□□□□ -0.33
PRKDCP78527 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
PRKDCP78527 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC13□□□□□ -0.33
PRKDCP78527 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
PRKDCP78527 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
PRKDCP78527 TUBB3P1-201ENST00000405796 1332 ntBASIC13□□□□□ -0.33
PRKDCP78527 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC13□□□□□ -0.33
PRKDCP78527 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC13□□□□□ -0.33
PRKDCP78527 SMN2-210ENST00000511812 867 ntTSL 2 BASIC13□□□□□ -0.33
PRKDCP78527 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC13□□□□□ -0.33
PRKDCP78527 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
PRKDCP78527 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC13□□□□□ -0.33
PRKDCP78527 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
PRKDCP78527 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
PRKDCP78527 LINC00602-201ENST00000629776 2065 ntBASIC12.99□□□□□ -0.33
PRKDCP78527 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
PRKDCP78527 AC079776.1-201ENST00000401540 1152 ntBASIC12.99□□□□□ -0.33
PRKDCP78527 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
PRKDCP78527 GPS2P2-201ENST00000430745 888 ntBASIC12.99□□□□□ -0.33
PRKDCP78527 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC12.99□□□□□ -0.33
PRKDCP78527 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
PRKDCP78527 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
PRKDCP78527 PWWP2AP1-201ENST00000429776 2273 ntBASIC12.99□□□□□ -0.33
PRKDCP78527 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
PRKDCP78527 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
PRKDCP78527 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC12.99□□□□□ -0.33
PRKDCP78527 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
PRKDCP78527 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
PRKDCP78527 RN7SL692P-201ENST00000464677 288 ntBASIC12.99□□□□□ -0.33
PRKDCP78527 AC112698.1-201ENST00000510299 916 ntBASIC12.99□□□□□ -0.33
PRKDCP78527 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
PRKDCP78527 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC12.99□□□□□ -0.33
PRKDCP78527 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC12.99□□□□□ -0.33
PRKDCP78527 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
PRKDCP78527 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC12.99□□□□□ -0.33
PRKDCP78527 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
PRKDCP78527 TDG-209ENST00000544861 1387 ntTSL 2 BASIC12.99□□□□□ -0.33
PRKDCP78527 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
PRKDCP78527 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
PRKDCP78527 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
PRKDCP78527 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
PRKDCP78527 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
PRKDCP78527 CD63-210ENST00000550776 870 ntTSL 5 BASIC12.99□□□□□ -0.33
PRKDCP78527 RPL28-209ENST00000560055 670 ntTSL 3 BASIC12.99□□□□□ -0.33
PRKDCP78527 AL353135.1-201ENST00000606729 504 ntBASIC12.99□□□□□ -0.33
PRKDCP78527 AD001527.2-201ENST00000622994 785 ntBASIC12.99□□□□□ -0.33
PRKDCP78527 ASL-204ENST00000395331 1538 ntTSL 5 BASIC12.99□□□□□ -0.33
PRKDCP78527 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
PRKDCP78527 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
PRKDCP78527 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC12.98□□□□□ -0.33
PRKDCP78527 CNN2P2-201ENST00000443536 909 ntBASIC12.98□□□□□ -0.33
PRKDCP78527 CNN2P3-201ENST00000450201 906 ntBASIC12.98□□□□□ -0.33
PRKDCP78527 AL136317.3-201ENST00000618497 906 ntBASIC12.98□□□□□ -0.33
PRKDCP78527 AL358472.5-202ENST00000641448 1267 ntBASIC12.98□□□□□ -0.33
PRKDCP78527 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC12.98□□□□□ -0.33
PRKDCP78527 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
PRKDCP78527 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
PRKDCP78527 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC12.98□□□□□ -0.33
PRKDCP78527 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
PRKDCP78527 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
PRKDCP78527 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
PRKDCP78527 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
PRKDCP78527 ACA64.2-201ENST00000459014 129 ntBASIC12.98□□□□□ -0.33
PRKDCP78527 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
PRKDCP78527 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC12.98□□□□□ -0.33
PRKDCP78527 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC12.98□□□□□ -0.33
PRKDCP78527 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
PRKDCP78527 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms