Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.06■□□□□ 0.48
MSH3P20585 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH3P20585 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
MSH3P20585 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
MSH3P20585 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.06■□□□□ 0.48
MSH3P20585 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
MSH3P20585 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
MSH3P20585 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
MSH3P20585 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSH3P20585 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH3P20585 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSH3P20585 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH3P20585 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MSH3P20585 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.05■□□□□ 0.48
MSH3P20585 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
MSH3P20585 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH3P20585 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.05■□□□□ 0.48
MSH3P20585 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MSH3P20585 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
MSH3P20585 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH3P20585 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MSH3P20585 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MSH3P20585 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
MSH3P20585 VENTXP5-201ENST00000523979 775 ntBASIC18.05■□□□□ 0.48
MSH3P20585 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.05■□□□□ 0.48
MSH3P20585 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.05■□□□□ 0.48
MSH3P20585 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
MSH3P20585 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.05■□□□□ 0.48
MSH3P20585 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.05■□□□□ 0.48
MSH3P20585 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH3P20585 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH3P20585 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.05■□□□□ 0.48
MSH3P20585 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH3P20585 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH3P20585 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH3P20585 LINC01126-201ENST00000623515 1646 ntBASIC18.05■□□□□ 0.48
MSH3P20585 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
MSH3P20585 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
MSH3P20585 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
MSH3P20585 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
MSH3P20585 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.04■□□□□ 0.48
MSH3P20585 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.04■□□□□ 0.48
MSH3P20585 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.04■□□□□ 0.48
MSH3P20585 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
MSH3P20585 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.04■□□□□ 0.48
MSH3P20585 AL121956.5-201ENST00000625261 221 ntBASIC18.04■□□□□ 0.48
MSH3P20585 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
MSH3P20585 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
MSH3P20585 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
MSH3P20585 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH3P20585 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
MSH3P20585 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.03■□□□□ 0.48
MSH3P20585 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MSH3P20585 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH3P20585 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
MSH3P20585 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
MSH3P20585 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MSH3P20585 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH3P20585 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH3P20585 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH3P20585 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH3P20585 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH3P20585 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MSH3P20585 MIR662-201ENST00000384847 95 ntBASIC18.03■□□□□ 0.48
MSH3P20585 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
MSH3P20585 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.03■□□□□ 0.48
MSH3P20585 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MSH3P20585 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
MSH3P20585 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
MSH3P20585 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MSH3P20585 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH3P20585 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.03■□□□□ 0.48
MSH3P20585 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
MSH3P20585 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
MSH3P20585 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH3P20585 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.03■□□□□ 0.48
MSH3P20585 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.02■□□□□ 0.48
MSH3P20585 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH3P20585 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.02■□□□□ 0.48
MSH3P20585 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH3P20585 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
MSH3P20585 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH3P20585 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.02■□□□□ 0.48
MSH3P20585 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms