Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.59
COL6A3P12111 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
COL6A3P12111 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.76■□□□□ 0.59
COL6A3P12111 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A3P12111 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A3P12111 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A3P12111 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A3P12111 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.76■□□□□ 0.59
COL6A3P12111 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.76■□□□□ 0.59
COL6A3P12111 GIMAP3P-201ENST00000495150 836 ntBASIC18.76■□□□□ 0.59
COL6A3P12111 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.76■□□□□ 0.59
COL6A3P12111 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.76■□□□□ 0.59
COL6A3P12111 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A3P12111 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.76■□□□□ 0.59
COL6A3P12111 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A3P12111 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.76■□□□□ 0.59
COL6A3P12111 AC074386.1-202ENST00000463561 864 ntBASIC18.76■□□□□ 0.59
COL6A3P12111 AC096734.2-201ENST00000562054 433 ntBASIC18.76■□□□□ 0.59
COL6A3P12111 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A3P12111 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A3P12111 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.75■□□□□ 0.59
COL6A3P12111 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC18.75■□□□□ 0.59
COL6A3P12111 SPTLC1P1-201ENST00000447199 261 ntBASIC18.75■□□□□ 0.59
COL6A3P12111 AC008687.5-201ENST00000593746 558 ntBASIC18.75■□□□□ 0.59
COL6A3P12111 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL6A3P12111 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A3P12111 REXO1L3P-201ENST00000622202 1288 ntBASIC18.75■□□□□ 0.59
COL6A3P12111 AC004790.2-201ENST00000623588 572 ntBASIC18.75■□□□□ 0.59
COL6A3P12111 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL6A3P12111 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A3P12111 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A3P12111 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A3P12111 KRT8P50-201ENST00000562022 1438 ntBASIC18.75■□□□□ 0.59
COL6A3P12111 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.75■□□□□ 0.59
COL6A3P12111 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A3P12111 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A3P12111 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A3P12111 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
COL6A3P12111 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.75■□□□□ 0.59
COL6A3P12111 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC18.75■□□□□ 0.59
COL6A3P12111 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.75■□□□□ 0.59
COL6A3P12111 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A3P12111 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.75■□□□□ 0.59
COL6A3P12111 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC18.75■□□□□ 0.59
COL6A3P12111 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL6A3P12111 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A3P12111 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A3P12111 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A3P12111 AC097493.3-201ENST00000509725 367 ntBASIC18.75■□□□□ 0.59
COL6A3P12111 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.75■□□□□ 0.59
COL6A3P12111 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.75■□□□□ 0.59
COL6A3P12111 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.75■□□□□ 0.59
COL6A3P12111 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A3P12111 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A3P12111 AL133338.1-201ENST00000565695 1517 ntBASIC18.74■□□□□ 0.59
COL6A3P12111 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.74■□□□□ 0.59
COL6A3P12111 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A3P12111 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A3P12111 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
COL6A3P12111 AC073314.1-201ENST00000568729 2216 ntBASIC18.74■□□□□ 0.59
COL6A3P12111 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A3P12111 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.74■□□□□ 0.59
COL6A3P12111 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A3P12111 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC18.74■□□□□ 0.59
COL6A3P12111 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A3P12111 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
COL6A3P12111 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.74■□□□□ 0.59
COL6A3P12111 AC092552.1-201ENST00000547243 906 ntBASIC18.74■□□□□ 0.59
COL6A3P12111 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.74■□□□□ 0.59
COL6A3P12111 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.74■□□□□ 0.59
COL6A3P12111 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A3P12111 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A3P12111 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A3P12111 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A3P12111 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.73■□□□□ 0.59
COL6A3P12111 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
COL6A3P12111 AC069335.1-201ENST00000489972 472 ntBASIC18.73■□□□□ 0.59
COL6A3P12111 FAM8A2P-201ENST00000528813 1142 ntBASIC18.73■□□□□ 0.59
COL6A3P12111 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.73■□□□□ 0.59
COL6A3P12111 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC18.73■□□□□ 0.59
COL6A3P12111 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
COL6A3P12111 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A3P12111 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A3P12111 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A3P12111 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A3P12111 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
COL6A3P12111 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
COL6A3P12111 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
COL6A3P12111 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.73■□□□□ 0.59
COL6A3P12111 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.73■□□□□ 0.59
COL6A3P12111 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.73■□□□□ 0.59
COL6A3P12111 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A3P12111 MIR658-201ENST00000385210 100 ntBASIC18.73■□□□□ 0.59
COL6A3P12111 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.73■□□□□ 0.59
COL6A3P12111 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A3P12111 TIMM8BP1-201ENST00000452384 211 ntBASIC18.73■□□□□ 0.59
COL6A3P12111 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A3P12111 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A3P12111 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.73■□□□□ 0.59
COL6A3P12111 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms