Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC21.3■■□□□ 1
HLA-DOAP06340 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC21.3■■□□□ 1
HLA-DOAP06340 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
HLA-DOAP06340 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HLA-DOAP06340 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.3■■□□□ 1
HLA-DOAP06340 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HLA-DOAP06340 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC21.3■■□□□ 1
HLA-DOAP06340 FAM197Y8-203ENST00000450145 560 ntBASIC21.3■■□□□ 1
HLA-DOAP06340 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC21.3■■□□□ 1
HLA-DOAP06340 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
HLA-DOAP06340 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
HLA-DOAP06340 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC21.3■■□□□ 1
HLA-DOAP06340 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC21.3■■□□□ 1
HLA-DOAP06340 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC21.3■■□□□ 1
HLA-DOAP06340 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
HLA-DOAP06340 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.3■■□□□ 1
HLA-DOAP06340 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HLA-DOAP06340 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.3■■□□□ 1
HLA-DOAP06340 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HLA-DOAP06340 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC21.29■■□□□ 1
HLA-DOAP06340 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC21.29■■□□□ 1
HLA-DOAP06340 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HLA-DOAP06340 AC073592.3-201ENST00000625118 1834 ntBASIC21.29■■□□□ 1
HLA-DOAP06340 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
HLA-DOAP06340 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HLA-DOAP06340 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC21.29■■□□□ 1
HLA-DOAP06340 AC132938.6-201ENST00000623828 1655 ntBASIC21.29■■□□□ 1
HLA-DOAP06340 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC21.29■■□□□ 1
HLA-DOAP06340 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HLA-DOAP06340 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HLA-DOAP06340 RBM17P3-201ENST00000417687 1192 ntBASIC21.29■■□□□ 1
HLA-DOAP06340 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HLA-DOAP06340 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC21.29■■□□□ 1
HLA-DOAP06340 PPIE-208ENST00000470213 927 ntTSL 3 BASIC21.29■■□□□ 1
HLA-DOAP06340 MOK-208ENST00000519058 917 ntTSL 2 BASIC21.29■■□□□ 1
HLA-DOAP06340 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC21.29■■□□□ 1
HLA-DOAP06340 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC21.29■■□□□ 1
HLA-DOAP06340 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC21.29■■□□□ 1
HLA-DOAP06340 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC21.29■■□□□ 1
HLA-DOAP06340 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC21.29■■□□□ 1
HLA-DOAP06340 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.29■■□□□ 1
HLA-DOAP06340 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.29■■□□□ 1
HLA-DOAP06340 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HLA-DOAP06340 HLA-A-201ENST00000376802 1334 ntBASIC21.29■■□□□ 1
HLA-DOAP06340 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC21.29■■□□□ 1
HLA-DOAP06340 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DOAP06340 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DOAP06340 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.28■■□□□ 1
HLA-DOAP06340 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC21.28■■□□□ 1
HLA-DOAP06340 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DOAP06340 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.28■■□□□ 1
HLA-DOAP06340 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC21.28■■□□□ 1
HLA-DOAP06340 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.28■■□□□ 1
HLA-DOAP06340 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.28■■□□□ 1
HLA-DOAP06340 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.28■■□□□ 1
HLA-DOAP06340 MED16-201ENST00000269814 1199 ntTSL 5 BASIC21.28■■□□□ 1
HLA-DOAP06340 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DOAP06340 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DOAP06340 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DOAP06340 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC21.28■■□□□ 1
HLA-DOAP06340 AF186996.4-201ENST00000467186 377 ntBASIC21.28■■□□□ 1
HLA-DOAP06340 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
HLA-DOAP06340 AL773604.1-201ENST00000617417 272 ntBASIC21.28■■□□□ 1
HLA-DOAP06340 AL355877.3-201ENST00000622820 899 ntBASIC21.28■■□□□ 1
HLA-DOAP06340 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC21.28■■□□□ 1
HLA-DOAP06340 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
HLA-DOAP06340 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DOAP06340 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DOAP06340 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC21.28■■□□□ 1
HLA-DOAP06340 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DOAP06340 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DOAP06340 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DOAP06340 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC21.28■■□□□ 1
HLA-DOAP06340 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC21.28■■□□□ 1
HLA-DOAP06340 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.28■■□□□ 1
HLA-DOAP06340 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21.27■■□□□ 1
HLA-DOAP06340 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
HLA-DOAP06340 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
HLA-DOAP06340 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
HLA-DOAP06340 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.27■■□□□ 1
HLA-DOAP06340 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
HLA-DOAP06340 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
HLA-DOAP06340 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HLA-DOAP06340 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HLA-DOAP06340 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
HLA-DOAP06340 AL022342.1-201ENST00000400363 863 ntBASIC21.27■■□□□ 1
HLA-DOAP06340 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC21.27■■□□□ 1
HLA-DOAP06340 KRT18P67-201ENST00000432816 1264 ntBASIC21.27■■□□□ 1
HLA-DOAP06340 AP000347.1-202ENST00000435868 847 ntBASIC21.27■■□□□ 1
HLA-DOAP06340 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC21.27■■□□□ 1
HLA-DOAP06340 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC21.27■■□□□ 1
HLA-DOAP06340 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC21.27■■□□□ 1
HLA-DOAP06340 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.27■■□□□ 1
HLA-DOAP06340 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC21.27■■□□□ 1
HLA-DOAP06340 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC21.27■■□□□ 1
HLA-DOAP06340 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
HLA-DOAP06340 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
HLA-DOAP06340 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
HLA-DOAP06340 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HLA-DOAP06340 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms