Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
TNFP01375 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.66■□□□□ 0.42
TNFP01375 AC132008.2-207ENST00000454517 770 ntBASIC17.66■□□□□ 0.42
TNFP01375 AC009078.2-202ENST00000463353 338 ntBASIC17.66■□□□□ 0.42
TNFP01375 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TNFP01375 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.66■□□□□ 0.42
TNFP01375 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.66■□□□□ 0.42
TNFP01375 AL138831.2-201ENST00000606564 490 ntBASIC17.66■□□□□ 0.42
TNFP01375 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TNFP01375 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
TNFP01375 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TNFP01375 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TNFP01375 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.66■□□□□ 0.42
TNFP01375 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
TNFP01375 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
TNFP01375 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TNFP01375 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TNFP01375 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TNFP01375 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.66■□□□□ 0.42
TNFP01375 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.66■□□□□ 0.42
TNFP01375 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.66■□□□□ 0.42
TNFP01375 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
TNFP01375 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TNFP01375 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TNFP01375 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TNFP01375 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.65■□□□□ 0.42
TNFP01375 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TNFP01375 AC125634.1-201ENST00000438758 1403 ntBASIC17.65■□□□□ 0.42
TNFP01375 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.65■□□□□ 0.42
TNFP01375 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
TNFP01375 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TNFP01375 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.65■□□□□ 0.42
TNFP01375 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.65■□□□□ 0.42
TNFP01375 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.65■□□□□ 0.42
TNFP01375 AF238378.1-201ENST00000526806 358 ntBASIC17.65■□□□□ 0.42
TNFP01375 AP002469.2-201ENST00000531724 424 ntBASIC17.65■□□□□ 0.42
TNFP01375 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.65■□□□□ 0.42
TNFP01375 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TNFP01375 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
TNFP01375 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TNFP01375 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TNFP01375 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TNFP01375 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.65■□□□□ 0.42
TNFP01375 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TNFP01375 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
TNFP01375 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TNFP01375 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TNFP01375 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TNFP01375 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TNFP01375 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TNFP01375 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TNFP01375 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TNFP01375 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
TNFP01375 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
TNFP01375 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TNFP01375 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TNFP01375 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.64■□□□□ 0.41
TNFP01375 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TNFP01375 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.64■□□□□ 0.41
TNFP01375 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TNFP01375 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TNFP01375 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.64■□□□□ 0.41
TNFP01375 AP000974.1-201ENST00000623909 2387 ntBASIC17.64■□□□□ 0.41
TNFP01375 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TNFP01375 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.64■□□□□ 0.41
TNFP01375 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.64■□□□□ 0.41
TNFP01375 AL662844.1-201ENST00000546340 181 ntBASIC17.64■□□□□ 0.41
TNFP01375 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TNFP01375 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.64■□□□□ 0.41
TNFP01375 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TNFP01375 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.64■□□□□ 0.41
TNFP01375 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TNFP01375 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TNFP01375 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TNFP01375 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TNFP01375 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.64■□□□□ 0.41
TNFP01375 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TNFP01375 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TNFP01375 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TNFP01375 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.63■□□□□ 0.41
TNFP01375 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TNFP01375 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.63■□□□□ 0.41
TNFP01375 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.63■□□□□ 0.41
TNFP01375 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.63■□□□□ 0.41
TNFP01375 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.63■□□□□ 0.41
TNFP01375 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms