Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC14.61□□□□□ -0.07
HMGB3O15347 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 MTMR9LP-203ENST00000426597 1545 ntBASIC14.61□□□□□ -0.07
HMGB3O15347 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
HMGB3O15347 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC14.61□□□□□ -0.07
HMGB3O15347 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
HMGB3O15347 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC14.6□□□□□ -0.07
HMGB3O15347 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
HMGB3O15347 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
HMGB3O15347 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC14.6□□□□□ -0.07
HMGB3O15347 MIR193BHG-211ENST00000641433 5365 ntBASIC14.6□□□□□ -0.07
HMGB3O15347 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC14.6□□□□□ -0.07
HMGB3O15347 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC14.6□□□□□ -0.07
HMGB3O15347 TSPY21P-201ENST00000433481 731 ntBASIC14.6□□□□□ -0.07
HMGB3O15347 TUBB8P6-201ENST00000436895 1288 ntBASIC14.6□□□□□ -0.07
HMGB3O15347 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
HMGB3O15347 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC14.6□□□□□ -0.07
HMGB3O15347 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC14.6□□□□□ -0.07
HMGB3O15347 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC14.6□□□□□ -0.07
HMGB3O15347 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC14.6□□□□□ -0.07
HMGB3O15347 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC14.6□□□□□ -0.07
HMGB3O15347 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGB3O15347 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
HMGB3O15347 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGB3O15347 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
HMGB3O15347 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
HMGB3O15347 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGB3O15347 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGB3O15347 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
HMGB3O15347 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGB3O15347 GGT1-206ENST00000404223 952 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGB3O15347 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGB3O15347 AC007322.1-201ENST00000426983 750 ntBASIC14.59□□□□□ -0.07
HMGB3O15347 TSPY23P-201ENST00000440136 739 ntBASIC14.59□□□□□ -0.07
HMGB3O15347 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC14.59□□□□□ -0.07
HMGB3O15347 KRT18P16-201ENST00000510337 1294 ntBASIC14.59□□□□□ -0.07
HMGB3O15347 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGB3O15347 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
HMGB3O15347 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGB3O15347 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
HMGB3O15347 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
HMGB3O15347 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 RCC2P6-201ENST00000526625 1557 ntBASIC14.59□□□□□ -0.07
HMGB3O15347 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC14.59□□□□□ -0.07
HMGB3O15347 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB3O15347 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGB3O15347 CRK-204ENST00000574295 1391 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGB3O15347 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
HMGB3O15347 BANP-227ENST00000626016 2144 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGB3O15347 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
HMGB3O15347 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC14.58□□□□□ -0.07
HMGB3O15347 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
HMGB3O15347 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
HMGB3O15347 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
HMGB3O15347 AC022211.2-201ENST00000585075 2527 ntBASIC14.58□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms