Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.27■□□□□ 0.2
COL6A6A6NMZ7 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
COL6A6A6NMZ7 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.19
COL6A6A6NMZ7 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
COL6A6A6NMZ7 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
COL6A6A6NMZ7 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
COL6A6A6NMZ7 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL6A6A6NMZ7 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL6A6A6NMZ7 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
COL6A6A6NMZ7 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 MTCL1P1-201ENST00000446207 792 ntBASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 AC015911.4-201ENST00000588022 1070 ntBASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 AL163051.1-201ENST00000569214 1512 ntBASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 AP002414.1-201ENST00000391405 1147 ntBASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 AC109322.1-201ENST00000524499 1264 ntBASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A6A6NMZ7 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 IRX1P1-201ENST00000438849 1838 ntBASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 AC005593.1-201ENST00000624894 515 ntBASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A6A6NMZ7 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 LINC01006-201ENST00000333319 2292 ntBASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A6A6NMZ7 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms