Protein–RNA interactions for Protein: A6NKF7

TMEM88B, Transmembrane protein 88B, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88BA6NKF7 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TMEM88BA6NKF7 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TMEM88BA6NKF7 AC099343.3-201ENST00000605834 2503 ntBASIC20.96■□□□□ 0.95
TMEM88BA6NKF7 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.96■□□□□ 0.95
TMEM88BA6NKF7 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TMEM88BA6NKF7 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
TMEM88BA6NKF7 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 MIR661-201ENST00000384842 89 ntBASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 AC055876.3-201ENST00000431496 288 ntBASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 AL353135.1-201ENST00000606729 504 ntBASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 AC138649.4-201ENST00000612222 287 ntBASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 AC007064.4-201ENST00000637740 555 ntBASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC20.95■□□□□ 0.94
TMEM88BA6NKF7 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 HNRNPA1P40-201ENST00000426371 1278 ntBASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 DDX43P3-201ENST00000441064 443 ntBASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 AC122714.2-201ENST00000502787 707 ntBASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 CIPC-205ENST00000555437 566 ntTSL 3 BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 REM2-202ENST00000536884 1331 ntTSL 2 BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TMEM88BA6NKF7 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 GABARAPL3-202ENST00000624044 1851 ntBASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 GRAP-202ENST00000395635 834 ntTSL 2 BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 AC023141.13-201ENST00000604991 943 ntBASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 NCF1C-201ENST00000438382 1427 ntBASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM88BA6NKF7 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
TMEM88BA6NKF7 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.92■□□□□ 0.94
TMEM88BA6NKF7 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
TMEM88BA6NKF7 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TMEM88BA6NKF7 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TMEM88BA6NKF7 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TMEM88BA6NKF7 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TMEM88BA6NKF7 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC20.92■□□□□ 0.94
TMEM88BA6NKF7 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.92■□□□□ 0.94
TMEM88BA6NKF7 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TMEM88BA6NKF7 AL020989.1-201ENST00000422979 469 ntBASIC20.92■□□□□ 0.94
TMEM88BA6NKF7 AP005018.1-201ENST00000525475 301 ntBASIC20.92■□□□□ 0.94
TMEM88BA6NKF7 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC20.92■□□□□ 0.94
TMEM88BA6NKF7 NOP2-220ENST00000545915 630 ntTSL 2 BASIC20.92■□□□□ 0.94
TMEM88BA6NKF7 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC20.92■□□□□ 0.94
TMEM88BA6NKF7 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms