Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USH1CQ9Y6N9 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 POM121L13P-201ENST00000422362 380 ntBASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 UNC93B4-201ENST00000505679 747 ntBASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 PRSS44-201ENST00000515154 1146 ntBASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
USH1CQ9Y6N9 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
USH1CQ9Y6N9 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
USH1CQ9Y6N9 RCC2P3-201ENST00000418112 1537 ntBASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms