Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 AC079781.3-201ENST00000449110 356 ntBASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 AL591684.3-201ENST00000605187 298 ntBASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDP1Q9Y5B0 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 AL121912.1-201ENST00000603683 238 ntBASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.95■□□□□ 0.94
CTDP1Q9Y5B0 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 LINC00602-201ENST00000629776 2065 ntBASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 SAPCD2P3-201ENST00000455031 850 ntBASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 AC009078.2-202ENST00000463353 338 ntBASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.94■□□□□ 0.94
CTDP1Q9Y5B0 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 ANO7L1-203ENST00000602586 1720 ntBASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTDP1Q9Y5B0 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms