Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL20A1Q9P218 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL20A1Q9P218 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.47■□□□□ 0.87
COL20A1Q9P218 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.47■□□□□ 0.87
COL20A1Q9P218 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL20A1Q9P218 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL20A1Q9P218 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL20A1Q9P218 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL20A1Q9P218 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL20A1Q9P218 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL20A1Q9P218 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL20A1Q9P218 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL20A1Q9P218 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL20A1Q9P218 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL20A1Q9P218 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 AP001269.4-201ENST00000609611 512 ntBASIC20.46■□□□□ 0.87
COL20A1Q9P218 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL20A1Q9P218 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL20A1Q9P218 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL20A1Q9P218 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL20A1Q9P218 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL20A1Q9P218 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL20A1Q9P218 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 AC120498.9-201ENST00000339021 3867 ntBASIC20.46■□□□□ 0.87
COL20A1Q9P218 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.46■□□□□ 0.87
COL20A1Q9P218 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL20A1Q9P218 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL20A1Q9P218 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL20A1Q9P218 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.45■□□□□ 0.86
COL20A1Q9P218 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL20A1Q9P218 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL20A1Q9P218 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL20A1Q9P218 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
COL20A1Q9P218 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL20A1Q9P218 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
COL20A1Q9P218 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL20A1Q9P218 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.45■□□□□ 0.86
COL20A1Q9P218 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.45■□□□□ 0.86
COL20A1Q9P218 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.45■□□□□ 0.86
COL20A1Q9P218 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL20A1Q9P218 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL20A1Q9P218 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL20A1Q9P218 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL20A1Q9P218 AC093677.2-201ENST00000600169 1863 ntBASIC20.45■□□□□ 0.86
COL20A1Q9P218 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL20A1Q9P218 KRT8P47-201ENST00000604727 1398 ntBASIC20.45■□□□□ 0.86
COL20A1Q9P218 AC004408.2-201ENST00000623613 2777 ntBASIC20.45■□□□□ 0.86
COL20A1Q9P218 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.44■□□□□ 0.86
COL20A1Q9P218 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL20A1Q9P218 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL20A1Q9P218 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
COL20A1Q9P218 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.44■□□□□ 0.86
COL20A1Q9P218 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL20A1Q9P218 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL20A1Q9P218 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
COL20A1Q9P218 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL20A1Q9P218 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
COL20A1Q9P218 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
COL20A1Q9P218 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL20A1Q9P218 RNA5SP419-201ENST00000515908 135 ntBASIC20.44■□□□□ 0.86
COL20A1Q9P218 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.44■□□□□ 0.86
COL20A1Q9P218 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.44■□□□□ 0.86
COL20A1Q9P218 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC20.44■□□□□ 0.86
COL20A1Q9P218 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL20A1Q9P218 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL20A1Q9P218 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.44■□□□□ 0.86
COL20A1Q9P218 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.44■□□□□ 0.86
COL20A1Q9P218 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL20A1Q9P218 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL20A1Q9P218 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL20A1Q9P218 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.44■□□□□ 0.86
COL20A1Q9P218 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL20A1Q9P218 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL20A1Q9P218 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.44■□□□□ 0.86
COL20A1Q9P218 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.44■□□□□ 0.86
COL20A1Q9P218 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL20A1Q9P218 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL20A1Q9P218 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL20A1Q9P218 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
COL20A1Q9P218 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
COL20A1Q9P218 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms