Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNF41Q9H4P4 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 ATP5G2P1-201ENST00000433580 426 ntBASIC21.37■■□□□ 1.01
RNF41Q9H4P4 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 RN7SL606P-201ENST00000472779 293 ntBASIC21.37■■□□□ 1.01
RNF41Q9H4P4 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 AL592071.1-201ENST00000611956 408 ntBASIC21.37■■□□□ 1.01
RNF41Q9H4P4 AC093458.2-201ENST00000623150 629 ntBASIC21.37■■□□□ 1.01
RNF41Q9H4P4 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 ABALON-201ENST00000629058 1903 ntBASIC21.37■■□□□ 1.01
RNF41Q9H4P4 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF41Q9H4P4 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC21.36■■□□□ 1.01
RNF41Q9H4P4 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF41Q9H4P4 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 KRT18P1-202ENST00000452408 1331 ntBASIC21.35■■□□□ 1.01
RNF41Q9H4P4 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 AP002383.4-201ENST00000442518 975 ntBASIC21.35■■□□□ 1.01
RNF41Q9H4P4 NPAP1P7-201ENST00000613027 823 ntBASIC21.35■■□□□ 1.01
RNF41Q9H4P4 AC124864.1-201ENST00000623408 392 ntBASIC21.35■■□□□ 1.01
RNF41Q9H4P4 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 AC135050.7-201ENST00000624508 2218 ntBASIC21.35■■□□□ 1.01
RNF41Q9H4P4 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNF41Q9H4P4 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 AC022898.2-201ENST00000616822 1312 ntBASIC21.34■■□□□ 1.01
RNF41Q9H4P4 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 REXO1L9P-201ENST00000604264 2108 ntBASIC21.34■■□□□ 1.01
RNF41Q9H4P4 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 AC068472.1-201ENST00000474589 881 ntBASIC21.34■■□□□ 1.01
RNF41Q9H4P4 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RNF41Q9H4P4 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms