Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
MMP28Q9H239 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
MMP28Q9H239 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
MMP28Q9H239 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC16.05■□□□□ 0.16
MMP28Q9H239 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
MMP28Q9H239 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MMP28Q9H239 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.04■□□□□ 0.16
MMP28Q9H239 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MMP28Q9H239 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MMP28Q9H239 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MMP28Q9H239 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
MMP28Q9H239 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.04■□□□□ 0.16
MMP28Q9H239 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
MMP28Q9H239 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MMP28Q9H239 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MMP28Q9H239 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MMP28Q9H239 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
MMP28Q9H239 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.04■□□□□ 0.16
MMP28Q9H239 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
MMP28Q9H239 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.04■□□□□ 0.16
MMP28Q9H239 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
MMP28Q9H239 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.04■□□□□ 0.16
MMP28Q9H239 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.04■□□□□ 0.16
MMP28Q9H239 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MMP28Q9H239 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
MMP28Q9H239 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MMP28Q9H239 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC16.04■□□□□ 0.16
MMP28Q9H239 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC16.04■□□□□ 0.16
MMP28Q9H239 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC16.04■□□□□ 0.16
MMP28Q9H239 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC16.04■□□□□ 0.16
MMP28Q9H239 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC16.04■□□□□ 0.16
MMP28Q9H239 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MMP28Q9H239 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MMP28Q9H239 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MMP28Q9H239 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.04■□□□□ 0.16
MMP28Q9H239 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
MMP28Q9H239 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
MMP28Q9H239 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.04■□□□□ 0.16
MMP28Q9H239 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
MMP28Q9H239 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC16.03■□□□□ 0.16
MMP28Q9H239 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 FER1L4-210ENST00000615531 5998 ntBASIC16.03■□□□□ 0.16
MMP28Q9H239 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.03■□□□□ 0.16
MMP28Q9H239 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
MMP28Q9H239 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
MMP28Q9H239 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 LINC00602-201ENST00000629776 2065 ntBASIC16.03■□□□□ 0.16
MMP28Q9H239 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
MMP28Q9H239 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC16.03■□□□□ 0.16
MMP28Q9H239 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC16.03■□□□□ 0.16
MMP28Q9H239 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC16.03■□□□□ 0.16
MMP28Q9H239 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC16.03■□□□□ 0.16
MMP28Q9H239 PNN-205ENST00000556530 601 ntTSL 2 BASIC16.03■□□□□ 0.16
MMP28Q9H239 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.03■□□□□ 0.16
MMP28Q9H239 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
MMP28Q9H239 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
MMP28Q9H239 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
MMP28Q9H239 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
MMP28Q9H239 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
MMP28Q9H239 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
MMP28Q9H239 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
MMP28Q9H239 AL513477.1-201ENST00000602865 2407 ntBASIC16.03■□□□□ 0.16
MMP28Q9H239 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MMP28Q9H239 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
MMP28Q9H239 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.02■□□□□ 0.16
MMP28Q9H239 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
MMP28Q9H239 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms