Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC42Q96M95 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC42Q96M95 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC42Q96M95 AL645608.8-201ENST00000606034 2086 ntBASIC19.61■□□□□ 0.73
CCDC42Q96M95 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC42Q96M95 PRORSD1P-202ENST00000563365 2154 ntBASIC19.6■□□□□ 0.73
CCDC42Q96M95 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC42Q96M95 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC42Q96M95 CRYGFP-201ENST00000418459 633 ntBASIC19.6■□□□□ 0.73
CCDC42Q96M95 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC42Q96M95 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC42Q96M95 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC42Q96M95 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC42Q96M95 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC42Q96M95 KRT8P7-201ENST00000533003 1432 ntBASIC19.59■□□□□ 0.73
CCDC42Q96M95 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.59■□□□□ 0.73
CCDC42Q96M95 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC42Q96M95 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC42Q96M95 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC42Q96M95 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC42Q96M95 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CCDC42Q96M95 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CCDC42Q96M95 KRT18P23-201ENST00000435622 1283 ntBASIC19.59■□□□□ 0.73
CCDC42Q96M95 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC42Q96M95 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.59■□□□□ 0.73
CCDC42Q96M95 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC42Q96M95 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC42Q96M95 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
CCDC42Q96M95 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC42Q96M95 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CCDC42Q96M95 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC42Q96M95 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC42Q96M95 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC42Q96M95 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC42Q96M95 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC42Q96M95 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC42Q96M95 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC42Q96M95 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC42Q96M95 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC42Q96M95 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC42Q96M95 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC42Q96M95 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.58■□□□□ 0.73
CCDC42Q96M95 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC42Q96M95 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.73
CCDC42Q96M95 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.58■□□□□ 0.73
CCDC42Q96M95 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC42Q96M95 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC42Q96M95 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.73
CCDC42Q96M95 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC42Q96M95 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
CCDC42Q96M95 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC42Q96M95 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.58■□□□□ 0.72
CCDC42Q96M95 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
CCDC42Q96M95 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC42Q96M95 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.58■□□□□ 0.72
CCDC42Q96M95 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC42Q96M95 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC42Q96M95 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC42Q96M95 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.72
CCDC42Q96M95 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC42Q96M95 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC42Q96M95 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CCDC42Q96M95 LINC01126-201ENST00000623515 1646 ntBASIC19.58■□□□□ 0.72
CCDC42Q96M95 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC42Q96M95 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC42Q96M95 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC42Q96M95 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC42Q96M95 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC42Q96M95 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC42Q96M95 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC42Q96M95 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC42Q96M95 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC42Q96M95 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC42Q96M95 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC42Q96M95 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC42Q96M95 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC42Q96M95 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.57■□□□□ 0.72
CCDC42Q96M95 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC42Q96M95 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC42Q96M95 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC42Q96M95 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CCDC42Q96M95 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC42Q96M95 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC42Q96M95 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms