Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
HLA-CQ95604 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-CQ95604 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-CQ95604 KRT8P47-201ENST00000604727 1398 ntBASIC18.68■□□□□ 0.58
HLA-CQ95604 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-CQ95604 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-CQ95604 SDHAP2-201ENST00000455183 2001 ntBASIC18.68■□□□□ 0.58
HLA-CQ95604 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-CQ95604 KLK8-202ENST00000320838 456 ntTSL 5 BASIC18.68■□□□□ 0.58
HLA-CQ95604 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
HLA-CQ95604 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.68■□□□□ 0.58
HLA-CQ95604 PMS2P4-201ENST00000412466 1052 ntBASIC18.68■□□□□ 0.58
HLA-CQ95604 SPDYE21P-201ENST00000413323 827 ntBASIC18.68■□□□□ 0.58
HLA-CQ95604 ELK2BP-201ENST00000415014 1224 ntBASIC18.68■□□□□ 0.58
HLA-CQ95604 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.68■□□□□ 0.58
HLA-CQ95604 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.68■□□□□ 0.58
HLA-CQ95604 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.68■□□□□ 0.58
HLA-CQ95604 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.68■□□□□ 0.58
HLA-CQ95604 AC008667.4-201ENST00000607370 168 ntBASIC18.68■□□□□ 0.58
HLA-CQ95604 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-CQ95604 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-CQ95604 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-CQ95604 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-CQ95604 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.68■□□□□ 0.58
HLA-CQ95604 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
HLA-CQ95604 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-CQ95604 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.67■□□□□ 0.58
HLA-CQ95604 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.67■□□□□ 0.58
HLA-CQ95604 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-CQ95604 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-CQ95604 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.67■□□□□ 0.58
HLA-CQ95604 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-CQ95604 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-CQ95604 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
HLA-CQ95604 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.67■□□□□ 0.58
HLA-CQ95604 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.67■□□□□ 0.58
HLA-CQ95604 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.67■□□□□ 0.58
HLA-CQ95604 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-CQ95604 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
HLA-CQ95604 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC18.67■□□□□ 0.58
HLA-CQ95604 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
HLA-CQ95604 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-CQ95604 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.67■□□□□ 0.58
HLA-CQ95604 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-CQ95604 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.67■□□□□ 0.58
HLA-CQ95604 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-CQ95604 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
HLA-CQ95604 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
HLA-CQ95604 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
HLA-CQ95604 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.67■□□□□ 0.58
HLA-CQ95604 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-CQ95604 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.67■□□□□ 0.58
HLA-CQ95604 BCAR1-209ENST00000546196 1340 ntBASIC18.67■□□□□ 0.58
HLA-CQ95604 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-CQ95604 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-CQ95604 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-CQ95604 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-CQ95604 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.66■□□□□ 0.58
HLA-CQ95604 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.66■□□□□ 0.58
HLA-CQ95604 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HLA-CQ95604 MRPL20P1-201ENST00000400819 433 ntBASIC18.66■□□□□ 0.58
HLA-CQ95604 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-CQ95604 KRT19P2-202ENST00000557173 1012 ntBASIC18.66■□□□□ 0.58
HLA-CQ95604 AC005225.4-201ENST00000557330 545 ntBASIC18.66■□□□□ 0.58
HLA-CQ95604 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC18.66■□□□□ 0.58
HLA-CQ95604 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.66■□□□□ 0.58
HLA-CQ95604 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
HLA-CQ95604 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
HLA-CQ95604 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.66■□□□□ 0.58
HLA-CQ95604 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.66■□□□□ 0.58
HLA-CQ95604 AD001527.2-201ENST00000622994 785 ntBASIC18.66■□□□□ 0.58
HLA-CQ95604 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-CQ95604 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-CQ95604 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-CQ95604 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
HLA-CQ95604 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-CQ95604 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-CQ95604 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-CQ95604 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-CQ95604 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-CQ95604 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-CQ95604 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.65■□□□□ 0.58
HLA-CQ95604 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-CQ95604 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.65■□□□□ 0.58
HLA-CQ95604 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-CQ95604 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HLA-CQ95604 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-CQ95604 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
HLA-CQ95604 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-CQ95604 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HLA-CQ95604 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.65■□□□□ 0.58
HLA-CQ95604 EDF1-203ENST00000371649 790 ntTSL 2 BASIC18.65■□□□□ 0.58
HLA-CQ95604 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
HLA-CQ95604 AC004461.1-201ENST00000412461 403 ntBASIC18.65■□□□□ 0.58
HLA-CQ95604 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-CQ95604 AC074386.1-202ENST00000463561 864 ntBASIC18.65■□□□□ 0.58
HLA-CQ95604 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-CQ95604 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.65■□□□□ 0.58
HLA-CQ95604 RPS15P9-201ENST00000494093 319 ntBASIC18.65■□□□□ 0.58
HLA-CQ95604 AC109322.1-201ENST00000524499 1264 ntBASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms