Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 MIR1238-201ENST00000408483 83 ntBASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 AC007663.1-201ENST00000438948 1240 ntBASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 FITM1-202ENST00000559294 800 ntBASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 AC112497.1-201ENST00000624824 639 ntBASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
ATG4AQ8WYN0 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.83■□□□□ 0.61
ATG4AQ8WYN0 KRT8P7-201ENST00000533003 1432 ntBASIC18.83■□□□□ 0.61
ATG4AQ8WYN0 AC020916.1-201ENST00000587762 1774 ntBASIC18.83■□□□□ 0.61
ATG4AQ8WYN0 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
ATG4AQ8WYN0 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ATG4AQ8WYN0 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ATG4AQ8WYN0 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.61
ATG4AQ8WYN0 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
ATG4AQ8WYN0 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ATG4AQ8WYN0 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ATG4AQ8WYN0 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.83■□□□□ 0.61
ATG4AQ8WYN0 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ATG4AQ8WYN0 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ATG4AQ8WYN0 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.83■□□□□ 0.61
ATG4AQ8WYN0 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 INGX-201ENST00000359239 846 ntBASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 BX088651.1-201ENST00000540551 451 ntBASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 AL645608.8-201ENST00000606034 2086 ntBASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ATG4AQ8WYN0 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 CCR12P-201ENST00000446203 998 ntBASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 AC104390.1-201ENST00000555663 520 ntBASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 MIR4785-201ENST00000585005 73 ntBASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.82■□□□□ 0.6
ATG4AQ8WYN0 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 AL355075.4-201ENST00000554988 638 ntBASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4AQ8WYN0 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms