Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 TERC-201ENST00000602385 541 ntBASIC18.17■□□□□ 0.5
HMGB4Q8WW32 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 INTS4P1-201ENST00000438455 1935 ntBASIC18.17■□□□□ 0.5
HMGB4Q8WW32 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 RPS2P28-201ENST00000314255 741 ntBASIC18.16■□□□□ 0.5
HMGB4Q8WW32 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 LINC01126-201ENST00000623515 1646 ntBASIC18.16■□□□□ 0.5
HMGB4Q8WW32 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGB4Q8WW32 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 AC011467.2-201ENST00000598425 242 ntBASIC18.15■□□□□ 0.5
HMGB4Q8WW32 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 AC116407.3-201ENST00000623905 1129 ntBASIC18.15■□□□□ 0.5
HMGB4Q8WW32 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 PMS2P7-201ENST00000506558 1336 ntBASIC18.15■□□□□ 0.5
HMGB4Q8WW32 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 ZNF259P1-201ENST00000407656 1365 ntBASIC18.15■□□□□ 0.5
HMGB4Q8WW32 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 AC005332.7-201ENST00000614046 2005 ntBASIC18.15■□□□□ 0.5
HMGB4Q8WW32 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGB4Q8WW32 AC125634.1-201ENST00000438758 1403 ntBASIC18.15■□□□□ 0.5
HMGB4Q8WW32 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.14■□□□□ 0.5
HMGB4Q8WW32 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
HMGB4Q8WW32 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.5
HMGB4Q8WW32 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.14■□□□□ 0.5
HMGB4Q8WW32 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.14■□□□□ 0.5
HMGB4Q8WW32 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB4Q8WW32 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGB4Q8WW32 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGB4Q8WW32 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB4Q8WW32 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
HMGB4Q8WW32 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
HMGB4Q8WW32 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB4Q8WW32 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB4Q8WW32 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGB4Q8WW32 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB4Q8WW32 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB4Q8WW32 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB4Q8WW32 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms