Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP48Q86UV5 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC22.23■■□□□ 1.15
USP48Q86UV5 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP48Q86UV5 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC22.23■■□□□ 1.15
USP48Q86UV5 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC22.23■■□□□ 1.15
USP48Q86UV5 AC104390.1-201ENST00000555663 520 ntBASIC22.23■■□□□ 1.15
USP48Q86UV5 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC22.23■■□□□ 1.15
USP48Q86UV5 AL592071.1-201ENST00000611956 408 ntBASIC22.23■■□□□ 1.15
USP48Q86UV5 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
USP48Q86UV5 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP48Q86UV5 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC22.23■■□□□ 1.15
USP48Q86UV5 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP48Q86UV5 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
USP48Q86UV5 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
USP48Q86UV5 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
USP48Q86UV5 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP48Q86UV5 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP48Q86UV5 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC22.22■■□□□ 1.15
USP48Q86UV5 Z98044.1-201ENST00000632503 1764 ntBASIC22.22■■□□□ 1.15
USP48Q86UV5 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP48Q86UV5 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC22.22■■□□□ 1.15
USP48Q86UV5 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
USP48Q86UV5 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
USP48Q86UV5 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP48Q86UV5 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP48Q86UV5 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP48Q86UV5 AL031284.1-201ENST00000419297 478 ntBASIC22.22■■□□□ 1.15
USP48Q86UV5 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC22.22■■□□□ 1.15
USP48Q86UV5 AC091607.1-201ENST00000490318 1060 ntBASIC22.22■■□□□ 1.15
USP48Q86UV5 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC22.22■■□□□ 1.15
USP48Q86UV5 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP48Q86UV5 AP005901.3-202ENST00000581653 237 ntBASIC22.22■■□□□ 1.15
USP48Q86UV5 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC22.22■■□□□ 1.15
USP48Q86UV5 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC22.22■■□□□ 1.15
USP48Q86UV5 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP48Q86UV5 GPR32P1-201ENST00000601788 811 ntBASIC22.22■■□□□ 1.15
USP48Q86UV5 IGHV3OR16-7-201ENST00000604106 360 ntBASIC22.22■■□□□ 1.15
USP48Q86UV5 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
USP48Q86UV5 AC148477.8-201ENST00000624298 468 ntBASIC22.22■■□□□ 1.15
USP48Q86UV5 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP48Q86UV5 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP48Q86UV5 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC22.22■■□□□ 1.15
USP48Q86UV5 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP48Q86UV5 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
USP48Q86UV5 AL512353.2-201ENST00000448759 1962 ntBASIC22.21■■□□□ 1.15
USP48Q86UV5 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
USP48Q86UV5 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
USP48Q86UV5 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
USP48Q86UV5 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
USP48Q86UV5 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
USP48Q86UV5 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
USP48Q86UV5 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
USP48Q86UV5 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
USP48Q86UV5 MIR940-201ENST00000401276 94 ntBASIC22.21■■□□□ 1.15
USP48Q86UV5 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC22.21■■□□□ 1.15
USP48Q86UV5 RN7SL606P-201ENST00000472779 293 ntBASIC22.21■■□□□ 1.15
USP48Q86UV5 ABR-217ENST00000572441 563 ntTSL 4 BASIC22.21■■□□□ 1.15
USP48Q86UV5 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC22.21■■□□□ 1.15
USP48Q86UV5 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
USP48Q86UV5 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC22.21■■□□□ 1.15
USP48Q86UV5 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
USP48Q86UV5 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
USP48Q86UV5 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC22.21■■□□□ 1.15
USP48Q86UV5 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
USP48Q86UV5 AR-207ENST00000612010 3896 ntTSL 5 BASIC22.21■■□□□ 1.15
USP48Q86UV5 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
USP48Q86UV5 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
USP48Q86UV5 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
USP48Q86UV5 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC22.2■■□□□ 1.14
USP48Q86UV5 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
USP48Q86UV5 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
USP48Q86UV5 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
USP48Q86UV5 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC22.2■■□□□ 1.14
USP48Q86UV5 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC22.2■■□□□ 1.14
USP48Q86UV5 GUSBP12-201ENST00000513727 720 ntBASIC22.2■■□□□ 1.14
USP48Q86UV5 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC22.2■■□□□ 1.14
USP48Q86UV5 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC22.2■■□□□ 1.14
USP48Q86UV5 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
USP48Q86UV5 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
USP48Q86UV5 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
USP48Q86UV5 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
USP48Q86UV5 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
USP48Q86UV5 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC22.2■■□□□ 1.14
USP48Q86UV5 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC22.2■■□□□ 1.14
USP48Q86UV5 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
USP48Q86UV5 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
USP48Q86UV5 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
USP48Q86UV5 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
USP48Q86UV5 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC22.19■■□□□ 1.14
USP48Q86UV5 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
USP48Q86UV5 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
USP48Q86UV5 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC22.19■■□□□ 1.14
USP48Q86UV5 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
USP48Q86UV5 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
USP48Q86UV5 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
USP48Q86UV5 MED22-202ENST00000371999 987 ntTSL 3 BASIC22.19■■□□□ 1.14
USP48Q86UV5 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
USP48Q86UV5 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC22.19■■□□□ 1.14
USP48Q86UV5 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
USP48Q86UV5 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms