Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 MINOS1P3-201ENST00000457048 203 ntBASIC17.43■□□□□ 0.38
COL28A1Q2UY09 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 AL592071.1-201ENST00000611956 408 ntBASIC17.43■□□□□ 0.38
COL28A1Q2UY09 AC104109.2-201ENST00000602919 1418 ntBASIC17.43■□□□□ 0.38
COL28A1Q2UY09 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 HCG11-201ENST00000411553 5696 ntBASIC17.43■□□□□ 0.38
COL28A1Q2UY09 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 YBX2P1-201ENST00000394192 760 ntBASIC17.42■□□□□ 0.38
COL28A1Q2UY09 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 AC008608.2-201ENST00000606089 416 ntBASIC17.42■□□□□ 0.38
COL28A1Q2UY09 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 AC020916.1-201ENST00000587762 1774 ntBASIC17.42■□□□□ 0.38
COL28A1Q2UY09 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.42■□□□□ 0.38
COL28A1Q2UY09 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
COL28A1Q2UY09 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 AP005901.3-202ENST00000581653 237 ntBASIC17.41■□□□□ 0.38
COL28A1Q2UY09 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 AC092364.2-202ENST00000597012 1073 ntBASIC17.41■□□□□ 0.38
COL28A1Q2UY09 AL591684.3-201ENST00000605187 298 ntBASIC17.41■□□□□ 0.38
COL28A1Q2UY09 FAM197Y3-203ENST00000618346 717 ntBASIC17.41■□□□□ 0.38
COL28A1Q2UY09 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL28A1Q2UY09 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 IRX1P1-201ENST00000438849 1838 ntBASIC17.4■□□□□ 0.38
COL28A1Q2UY09 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms