Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC12.92□□□□□ -0.34
COL7A1Q02388 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC12.92□□□□□ -0.34
COL7A1Q02388 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC12.92□□□□□ -0.34
COL7A1Q02388 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC12.92□□□□□ -0.34
COL7A1Q02388 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC12.92□□□□□ -0.34
COL7A1Q02388 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
COL7A1Q02388 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
COL7A1Q02388 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC12.92□□□□□ -0.34
COL7A1Q02388 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC12.92□□□□□ -0.34
COL7A1Q02388 AC002472.2-201ENST00000442739 958 ntBASIC12.92□□□□□ -0.34
COL7A1Q02388 SIGLEC30P-201ENST00000455569 941 ntBASIC12.92□□□□□ -0.34
COL7A1Q02388 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
COL7A1Q02388 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC12.92□□□□□ -0.34
COL7A1Q02388 METTL23-205ENST00000588302 925 ntTSL 5 BASIC12.92□□□□□ -0.34
COL7A1Q02388 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC12.92□□□□□ -0.34
COL7A1Q02388 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC12.92□□□□□ -0.34
COL7A1Q02388 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC12.92□□□□□ -0.34
COL7A1Q02388 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 PC-214ENST00000628663 1470 ntTSL 5 BASIC12.91□□□□□ -0.34
COL7A1Q02388 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC12.91□□□□□ -0.34
COL7A1Q02388 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC12.91□□□□□ -0.34
COL7A1Q02388 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
COL7A1Q02388 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC12.91□□□□□ -0.34
COL7A1Q02388 AC010460.3-201ENST00000511359 1579 ntBASIC12.91□□□□□ -0.34
COL7A1Q02388 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
COL7A1Q02388 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
COL7A1Q02388 SOD2-201ENST00000337404 991 ntTSL 2 BASIC12.91□□□□□ -0.34
COL7A1Q02388 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
COL7A1Q02388 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC12.91□□□□□ -0.34
COL7A1Q02388 HLA-V-201ENST00000429037 534 ntBASIC12.91□□□□□ -0.34
COL7A1Q02388 PRYP5-201ENST00000451909 266 ntBASIC12.91□□□□□ -0.34
COL7A1Q02388 SLBP-205ENST00000488267 987 ntTSL 2 BASIC12.91□□□□□ -0.34
COL7A1Q02388 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 CD99-202ENST00000381180 530 ntTSL 2 BASIC12.91□□□□□ -0.34
COL7A1Q02388 AC015922.1-201ENST00000421102 1152 ntBASIC12.91□□□□□ -0.34
COL7A1Q02388 BX005266.1-201ENST00000473402 457 ntBASIC12.91□□□□□ -0.34
COL7A1Q02388 AF228730.6-201ENST00000641497 218 ntBASIC12.91□□□□□ -0.34
COL7A1Q02388 AC084121.3-201ENST00000641716 218 ntBASIC12.91□□□□□ -0.34
COL7A1Q02388 AC105233.6-201ENST00000642093 218 ntBASIC12.91□□□□□ -0.34
COL7A1Q02388 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 FEM1AP3-201ENST00000403722 1741 ntBASIC12.91□□□□□ -0.34
COL7A1Q02388 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC12.91□□□□□ -0.34
COL7A1Q02388 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL7A1Q02388 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
COL7A1Q02388 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL7A1Q02388 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL7A1Q02388 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL7A1Q02388 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL7A1Q02388 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL7A1Q02388 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL7A1Q02388 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
COL7A1Q02388 MIR661-201ENST00000384842 89 ntBASIC12.9□□□□□ -0.34
COL7A1Q02388 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL7A1Q02388 AC092474.2-201ENST00000424288 719 ntBASIC12.9□□□□□ -0.34
COL7A1Q02388 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC12.9□□□□□ -0.34
COL7A1Q02388 UGT1A2P-201ENST00000454886 866 ntBASIC12.9□□□□□ -0.34
COL7A1Q02388 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC12.9□□□□□ -0.34
COL7A1Q02388 MIR4745-201ENST00000577608 62 ntBASIC12.9□□□□□ -0.34
COL7A1Q02388 RN7SL204P-201ENST00000582831 262 ntBASIC12.9□□□□□ -0.34
COL7A1Q02388 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC12.9□□□□□ -0.34
COL7A1Q02388 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC12.9□□□□□ -0.34
COL7A1Q02388 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC12.9□□□□□ -0.34
COL7A1Q02388 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL7A1Q02388 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL7A1Q02388 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
COL7A1Q02388 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL7A1Q02388 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL7A1Q02388 ADH5P3-201ENST00000433842 1137 ntBASIC12.9□□□□□ -0.34
COL7A1Q02388 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC12.9□□□□□ -0.34
COL7A1Q02388 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL7A1Q02388 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC12.9□□□□□ -0.34
COL7A1Q02388 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL7A1Q02388 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms