Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.23■□□□□ 0.35
LIM2P55344 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.23■□□□□ 0.35
LIM2P55344 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.23■□□□□ 0.35
LIM2P55344 VENTXP5-201ENST00000523979 775 ntBASIC17.23■□□□□ 0.35
LIM2P55344 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.23■□□□□ 0.35
LIM2P55344 AC008687.5-201ENST00000593746 558 ntBASIC17.23■□□□□ 0.35
LIM2P55344 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.23■□□□□ 0.35
LIM2P55344 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
LIM2P55344 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.23■□□□□ 0.35
LIM2P55344 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.23■□□□□ 0.35
LIM2P55344 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
LIM2P55344 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
LIM2P55344 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
LIM2P55344 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.23■□□□□ 0.35
LIM2P55344 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.22■□□□□ 0.35
LIM2P55344 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIM2P55344 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIM2P55344 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIM2P55344 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
LIM2P55344 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.22■□□□□ 0.35
LIM2P55344 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIM2P55344 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIM2P55344 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIM2P55344 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIM2P55344 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIM2P55344 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LIM2P55344 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIM2P55344 AL031133.1-201ENST00000406807 723 ntBASIC17.22■□□□□ 0.35
LIM2P55344 SPDYE13P-201ENST00000445314 798 ntBASIC17.22■□□□□ 0.35
LIM2P55344 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIM2P55344 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
LIM2P55344 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.22■□□□□ 0.35
LIM2P55344 ZNF444P1-201ENST00000559497 298 ntBASIC17.22■□□□□ 0.35
LIM2P55344 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.22■□□□□ 0.35
LIM2P55344 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.22■□□□□ 0.35
LIM2P55344 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.22■□□□□ 0.35
LIM2P55344 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.22■□□□□ 0.35
LIM2P55344 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
LIM2P55344 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.22■□□□□ 0.35
LIM2P55344 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIM2P55344 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.22■□□□□ 0.35
LIM2P55344 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIM2P55344 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIM2P55344 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LIM2P55344 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.22■□□□□ 0.35
LIM2P55344 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIM2P55344 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIM2P55344 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.22■□□□□ 0.35
LIM2P55344 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
LIM2P55344 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.21■□□□□ 0.35
LIM2P55344 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 AC008764.6-201ENST00000595909 2069 ntBASIC17.21■□□□□ 0.35
LIM2P55344 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
LIM2P55344 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.21■□□□□ 0.35
LIM2P55344 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 MIR662-201ENST00000384847 95 ntBASIC17.21■□□□□ 0.35
LIM2P55344 MIR1224-201ENST00000408193 85 ntBASIC17.21■□□□□ 0.35
LIM2P55344 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LIM2P55344 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.21■□□□□ 0.35
LIM2P55344 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.21■□□□□ 0.35
LIM2P55344 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.21■□□□□ 0.35
LIM2P55344 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.21■□□□□ 0.35
LIM2P55344 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.21■□□□□ 0.35
LIM2P55344 AC010331.1-201ENST00000611423 582 ntBASIC17.21■□□□□ 0.35
LIM2P55344 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LIM2P55344 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.21■□□□□ 0.35
LIM2P55344 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
LIM2P55344 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms