Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.19■□□□□ 0.66
LHX1P48742 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.19■□□□□ 0.66
LHX1P48742 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
LHX1P48742 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LHX1P48742 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LHX1P48742 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LHX1P48742 NSUN5P1-202ENST00000421140 1535 ntBASIC19.19■□□□□ 0.66
LHX1P48742 NSUN5P2-203ENST00000457352 1529 ntBASIC19.19■□□□□ 0.66
LHX1P48742 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LHX1P48742 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
LHX1P48742 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LHX1P48742 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LHX1P48742 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
LHX1P48742 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LHX1P48742 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LHX1P48742 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LHX1P48742 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.18■□□□□ 0.66
LHX1P48742 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.18■□□□□ 0.66
LHX1P48742 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LHX1P48742 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LHX1P48742 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LHX1P48742 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LHX1P48742 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.18■□□□□ 0.66
LHX1P48742 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LHX1P48742 AC091607.1-201ENST00000490318 1060 ntBASIC19.18■□□□□ 0.66
LHX1P48742 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.18■□□□□ 0.66
LHX1P48742 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.18■□□□□ 0.66
LHX1P48742 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.18■□□□□ 0.66
LHX1P48742 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.18■□□□□ 0.66
LHX1P48742 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.18■□□□□ 0.66
LHX1P48742 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.18■□□□□ 0.66
LHX1P48742 AL121772.3-201ENST00000610840 674 ntBASIC19.18■□□□□ 0.66
LHX1P48742 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
LHX1P48742 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LHX1P48742 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.18■□□□□ 0.66
LHX1P48742 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
LHX1P48742 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LHX1P48742 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
LHX1P48742 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
LHX1P48742 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.18■□□□□ 0.66
LHX1P48742 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.18■□□□□ 0.66
LHX1P48742 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.18■□□□□ 0.66
LHX1P48742 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
LHX1P48742 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LHX1P48742 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LHX1P48742 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.17■□□□□ 0.66
LHX1P48742 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.17■□□□□ 0.66
LHX1P48742 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LHX1P48742 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
LHX1P48742 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
LHX1P48742 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LHX1P48742 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
LHX1P48742 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.17■□□□□ 0.66
LHX1P48742 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LHX1P48742 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
LHX1P48742 MINOS1P3-201ENST00000457048 203 ntBASIC19.17■□□□□ 0.66
LHX1P48742 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.17■□□□□ 0.66
LHX1P48742 AC112698.1-201ENST00000510299 916 ntBASIC19.17■□□□□ 0.66
LHX1P48742 DUTP2-201ENST00000519164 463 ntBASIC19.17■□□□□ 0.66
LHX1P48742 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.17■□□□□ 0.66
LHX1P48742 AC099336.1-202ENST00000602961 463 ntBASIC19.17■□□□□ 0.66
LHX1P48742 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.17■□□□□ 0.66
LHX1P48742 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
LHX1P48742 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.17■□□□□ 0.66
LHX1P48742 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LHX1P48742 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
LHX1P48742 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LHX1P48742 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
LHX1P48742 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.17■□□□□ 0.66
LHX1P48742 AL096828.2-201ENST00000567259 1965 ntBASIC19.17■□□□□ 0.66
LHX1P48742 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LHX1P48742 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LHX1P48742 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LHX1P48742 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LHX1P48742 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LHX1P48742 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.16■□□□□ 0.66
LHX1P48742 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.16■□□□□ 0.66
LHX1P48742 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
LHX1P48742 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LHX1P48742 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LHX1P48742 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.16■□□□□ 0.66
LHX1P48742 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LHX1P48742 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
LHX1P48742 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
LHX1P48742 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
LHX1P48742 TSPY19P-201ENST00000418461 509 ntBASIC19.16■□□□□ 0.66
LHX1P48742 TSPY18P-201ENST00000441642 509 ntBASIC19.16■□□□□ 0.66
LHX1P48742 FOSL1P1-201ENST00000511041 816 ntBASIC19.16■□□□□ 0.66
LHX1P48742 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.16■□□□□ 0.66
LHX1P48742 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LHX1P48742 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LHX1P48742 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.16■□□□□ 0.66
LHX1P48742 AC022898.2-201ENST00000616822 1312 ntBASIC19.16■□□□□ 0.66
LHX1P48742 AC135776.1-201ENST00000319817 2481 ntBASIC19.16■□□□□ 0.66
LHX1P48742 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LHX1P48742 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LHX1P48742 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
LHX1P48742 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
LHX1P48742 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
LHX1P48742 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms