Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.34■■□□□ 1.01
SCN4AP35499 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC21.34■■□□□ 1.01
SCN4AP35499 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SCN4AP35499 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SCN4AP35499 PMS2P4-201ENST00000412466 1052 ntBASIC21.34■■□□□ 1.01
SCN4AP35499 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
SCN4AP35499 TAF8-206ENST00000472818 719 ntTSL 2 BASIC21.34■■□□□ 1.01
SCN4AP35499 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC21.34■■□□□ 1.01
SCN4AP35499 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC21.34■■□□□ 1.01
SCN4AP35499 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.34■■□□□ 1.01
SCN4AP35499 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SCN4AP35499 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SCN4AP35499 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SCN4AP35499 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SCN4AP35499 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC21.33■■□□□ 1.01
SCN4AP35499 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC21.33■■□□□ 1.01
SCN4AP35499 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC21.33■■□□□ 1.01
SCN4AP35499 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC21.33■■□□□ 1.01
SCN4AP35499 AL353135.1-201ENST00000606729 504 ntBASIC21.33■■□□□ 1.01
SCN4AP35499 AC092902.6-201ENST00000641783 218 ntBASIC21.33■■□□□ 1.01
SCN4AP35499 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.33■■□□□ 1
SCN4AP35499 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
SCN4AP35499 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SCN4AP35499 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SCN4AP35499 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC21.32■■□□□ 1
SCN4AP35499 AC005034.1-201ENST00000426657 489 ntBASIC21.32■■□□□ 1
SCN4AP35499 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC21.32■■□□□ 1
SCN4AP35499 AC093214.1-201ENST00000511688 1107 ntBASIC21.32■■□□□ 1
SCN4AP35499 AQP6-203ENST00000551733 849 ntTSL 3 BASIC21.32■■□□□ 1
SCN4AP35499 AC022145.2-201ENST00000598203 171 ntBASIC21.32■■□□□ 1
SCN4AP35499 AC068137.2-201ENST00000605408 478 ntBASIC21.32■■□□□ 1
SCN4AP35499 AF228730.6-201ENST00000641497 218 ntBASIC21.32■■□□□ 1
SCN4AP35499 AC084121.3-201ENST00000641716 218 ntBASIC21.32■■□□□ 1
SCN4AP35499 AC105233.6-201ENST00000642093 218 ntBASIC21.32■■□□□ 1
SCN4AP35499 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.32■■□□□ 1
SCN4AP35499 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.32■■□□□ 1
SCN4AP35499 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SCN4AP35499 AC099343.3-201ENST00000605834 2503 ntBASIC21.32■■□□□ 1
SCN4AP35499 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.32■■□□□ 1
SCN4AP35499 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SCN4AP35499 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SCN4AP35499 MYLKP1-201ENST00000509077 1580 ntBASIC21.32■■□□□ 1
SCN4AP35499 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.32■■□□□ 1
SCN4AP35499 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SCN4AP35499 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.32■■□□□ 1
SCN4AP35499 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
SCN4AP35499 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC21.32■■□□□ 1
SCN4AP35499 AC007274.1-201ENST00000439805 662 ntBASIC21.32■■□□□ 1
SCN4AP35499 SMN2-210ENST00000511812 867 ntTSL 2 BASIC21.32■■□□□ 1
SCN4AP35499 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC21.32■■□□□ 1
SCN4AP35499 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC21.32■■□□□ 1
SCN4AP35499 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
SCN4AP35499 AC004790.2-201ENST00000623588 572 ntBASIC21.32■■□□□ 1
SCN4AP35499 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SCN4AP35499 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SCN4AP35499 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SCN4AP35499 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
SCN4AP35499 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC21.31■■□□□ 1
SCN4AP35499 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.31■■□□□ 1
SCN4AP35499 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC21.31■■□□□ 1
SCN4AP35499 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
SCN4AP35499 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC21.31■■□□□ 1
SCN4AP35499 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC21.31■■□□□ 1
SCN4AP35499 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC21.31■■□□□ 1
SCN4AP35499 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC21.31■■□□□ 1
SCN4AP35499 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.31■■□□□ 1
SCN4AP35499 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC21.31■■□□□ 1
SCN4AP35499 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC21.31■■□□□ 1
SCN4AP35499 MIR4745-201ENST00000577608 62 ntBASIC21.31■■□□□ 1
SCN4AP35499 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC21.31■■□□□ 1
SCN4AP35499 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SCN4AP35499 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC21.31■■□□□ 1
SCN4AP35499 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SCN4AP35499 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.31■■□□□ 1
SCN4AP35499 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC21.3■■□□□ 1
SCN4AP35499 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SCN4AP35499 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SCN4AP35499 TBC1D3P5-201ENST00000579401 1545 ntBASIC21.3■■□□□ 1
SCN4AP35499 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SCN4AP35499 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.3■■□□□ 1
SCN4AP35499 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.3■■□□□ 1
SCN4AP35499 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.3■■□□□ 1
SCN4AP35499 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC21.3■■□□□ 1
SCN4AP35499 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
SCN4AP35499 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC21.3■■□□□ 1
SCN4AP35499 SLBP-205ENST00000488267 987 ntTSL 2 BASIC21.3■■□□□ 1
SCN4AP35499 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC21.3■■□□□ 1
SCN4AP35499 AC012645.4-201ENST00000610691 1061 ntBASIC21.3■■□□□ 1
SCN4AP35499 AC009093.7-201ENST00000623853 1223 ntBASIC21.3■■□□□ 1
SCN4AP35499 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
SCN4AP35499 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SCN4AP35499 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SCN4AP35499 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SCN4AP35499 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SCN4AP35499 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.3■■□□□ 1
SCN4AP35499 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.3■■□□□ 1
SCN4AP35499 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.3■■□□□ 1
SCN4AP35499 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SCN4AP35499 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SCN4AP35499 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms