Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A1P20908 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
COL5A1P20908 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.34■□□□□ 0.37
COL5A1P20908 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
COL5A1P20908 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL5A1P20908 AC009947.1-201ENST00000444350 727 ntBASIC17.33■□□□□ 0.37
COL5A1P20908 AP006288.1-201ENST00000446065 395 ntBASIC17.33■□□□□ 0.37
COL5A1P20908 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
COL5A1P20908 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL5A1P20908 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.33■□□□□ 0.37
COL5A1P20908 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.33■□□□□ 0.37
COL5A1P20908 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL5A1P20908 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL5A1P20908 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL5A1P20908 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL5A1P20908 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A1P20908 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
COL5A1P20908 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
COL5A1P20908 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A1P20908 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A1P20908 AC002310.6-201ENST00000624451 1377 ntBASIC17.33■□□□□ 0.36
COL5A1P20908 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.33■□□□□ 0.36
COL5A1P20908 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
COL5A1P20908 TNXA-203ENST00000507684 2038 ntBASIC17.33■□□□□ 0.36
COL5A1P20908 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A1P20908 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A1P20908 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A1P20908 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.33■□□□□ 0.36
COL5A1P20908 AC073621.1-201ENST00000392730 636 ntBASIC17.33■□□□□ 0.36
COL5A1P20908 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.33■□□□□ 0.36
COL5A1P20908 MIR3687-2-201ENST00000577708 61 ntBASIC17.33■□□□□ 0.36
COL5A1P20908 MIR3687-1-201ENST00000614492 61 ntBASIC17.33■□□□□ 0.36
COL5A1P20908 MIR1199-201ENST00000621445 119 ntBASIC17.33■□□□□ 0.36
COL5A1P20908 AC073592.4-201ENST00000623827 446 ntBASIC17.33■□□□□ 0.36
COL5A1P20908 PGM5P2-202ENST00000637225 1043 ntBASIC17.33■□□□□ 0.36
COL5A1P20908 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A1P20908 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.33■□□□□ 0.36
COL5A1P20908 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A1P20908 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
COL5A1P20908 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL5A1P20908 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL5A1P20908 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.32■□□□□ 0.36
COL5A1P20908 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL5A1P20908 LINC00602-201ENST00000629776 2065 ntBASIC17.32■□□□□ 0.36
COL5A1P20908 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.32■□□□□ 0.36
COL5A1P20908 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
COL5A1P20908 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL5A1P20908 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.32■□□□□ 0.36
COL5A1P20908 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL5A1P20908 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.32■□□□□ 0.36
COL5A1P20908 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.32■□□□□ 0.36
COL5A1P20908 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL5A1P20908 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL5A1P20908 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.32■□□□□ 0.36
COL5A1P20908 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.32■□□□□ 0.36
COL5A1P20908 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.32■□□□□ 0.36
COL5A1P20908 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.31■□□□□ 0.36
COL5A1P20908 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A1P20908 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
COL5A1P20908 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.31■□□□□ 0.36
COL5A1P20908 AL031598.1-201ENST00000561511 1773 ntBASIC17.31■□□□□ 0.36
COL5A1P20908 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.31■□□□□ 0.36
COL5A1P20908 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A1P20908 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A1P20908 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.31■□□□□ 0.36
COL5A1P20908 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A1P20908 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.31■□□□□ 0.36
COL5A1P20908 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.31■□□□□ 0.36
COL5A1P20908 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.31■□□□□ 0.36
COL5A1P20908 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.31■□□□□ 0.36
COL5A1P20908 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
COL5A1P20908 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
COL5A1P20908 AC006557.2-201ENST00000592985 1240 ntBASIC17.31■□□□□ 0.36
COL5A1P20908 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
COL5A1P20908 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
COL5A1P20908 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
COL5A1P20908 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.31■□□□□ 0.36
COL5A1P20908 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
COL5A1P20908 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.31■□□□□ 0.36
COL5A1P20908 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
COL5A1P20908 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A1P20908 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.31■□□□□ 0.36
COL5A1P20908 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A1P20908 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
COL5A1P20908 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
COL5A1P20908 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A1P20908 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A1P20908 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.31■□□□□ 0.36
COL5A1P20908 PMPCAP1-201ENST00000508114 1576 ntBASIC17.31■□□□□ 0.36
COL5A1P20908 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A1P20908 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A1P20908 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A1P20908 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.31■□□□□ 0.36
COL5A1P20908 AC096633.1-201ENST00000422446 749 ntBASIC17.31■□□□□ 0.36
COL5A1P20908 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.31■□□□□ 0.36
COL5A1P20908 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.31■□□□□ 0.36
COL5A1P20908 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A1P20908 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.31■□□□□ 0.36
COL5A1P20908 AC027796.2-201ENST00000575326 344 ntBASIC17.31■□□□□ 0.36
COL5A1P20908 AP000867.4-201ENST00000641616 219 ntBASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms