Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 HAUS4P1-201ENST00000406739 1145 ntBASIC18.81■□□□□ 0.6
COL6A3P12111 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.81■□□□□ 0.6
COL6A3P12111 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.81■□□□□ 0.6
COL6A3P12111 AL390754.1-201ENST00000619088 582 ntBASIC18.81■□□□□ 0.6
COL6A3P12111 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A3P12111 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A3P12111 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.8■□□□□ 0.6
COL6A3P12111 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A3P12111 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.8■□□□□ 0.6
COL6A3P12111 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.8■□□□□ 0.6
COL6A3P12111 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A3P12111 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.8■□□□□ 0.6
COL6A3P12111 SLC25A39P2-201ENST00000537614 270 ntBASIC18.8■□□□□ 0.6
COL6A3P12111 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A3P12111 AC148477.5-201ENST00000625164 1645 ntBASIC18.8■□□□□ 0.6
COL6A3P12111 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A3P12111 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.8■□□□□ 0.6
COL6A3P12111 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC18.8■□□□□ 0.6
COL6A3P12111 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A3P12111 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A3P12111 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A3P12111 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL6A3P12111 KRT17P7-201ENST00000451704 1104 ntBASIC18.8■□□□□ 0.6
COL6A3P12111 PRYP5-201ENST00000451909 266 ntBASIC18.8■□□□□ 0.6
COL6A3P12111 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.8■□□□□ 0.6
COL6A3P12111 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.8■□□□□ 0.6
COL6A3P12111 AC004706.3-202ENST00000621574 984 ntBASIC18.8■□□□□ 0.6
COL6A3P12111 AL022326.1-202ENST00000641533 845 ntBASIC18.8■□□□□ 0.6
COL6A3P12111 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.8■□□□□ 0.6
COL6A3P12111 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A3P12111 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A3P12111 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A3P12111 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A3P12111 AC092919.2-201ENST00000623631 1645 ntBASIC18.79■□□□□ 0.6
COL6A3P12111 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A3P12111 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A3P12111 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A3P12111 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.79■□□□□ 0.6
COL6A3P12111 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
COL6A3P12111 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.79■□□□□ 0.6
COL6A3P12111 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A3P12111 PACS1-203ENST00000524815 628 ntTSL 4 BASIC18.79■□□□□ 0.6
COL6A3P12111 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.79■□□□□ 0.6
COL6A3P12111 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
COL6A3P12111 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A3P12111 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A3P12111 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC18.79■□□□□ 0.6
COL6A3P12111 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.79■□□□□ 0.6
COL6A3P12111 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.79■□□□□ 0.6
COL6A3P12111 IGHV3OR16-16-201ENST00000563644 343 ntBASIC18.79■□□□□ 0.6
COL6A3P12111 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.79■□□□□ 0.6
COL6A3P12111 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.78■□□□□ 0.6
COL6A3P12111 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A3P12111 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
COL6A3P12111 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC18.78■□□□□ 0.6
COL6A3P12111 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.78■□□□□ 0.6
COL6A3P12111 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A3P12111 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.78■□□□□ 0.6
COL6A3P12111 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
COL6A3P12111 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
COL6A3P12111 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.78■□□□□ 0.6
COL6A3P12111 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.78■□□□□ 0.6
COL6A3P12111 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.78■□□□□ 0.6
COL6A3P12111 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A3P12111 AP001059.3-201ENST00000619053 235 ntBASIC18.78■□□□□ 0.6
COL6A3P12111 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A3P12111 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A3P12111 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
COL6A3P12111 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A3P12111 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
COL6A3P12111 TREML5P-201ENST00000421694 576 ntBASIC18.77■□□□□ 0.6
COL6A3P12111 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A3P12111 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.77■□□□□ 0.6
COL6A3P12111 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.77■□□□□ 0.6
COL6A3P12111 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A3P12111 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
COL6A3P12111 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A3P12111 AL162274.1-201ENST00000617191 1098 ntBASIC18.77■□□□□ 0.6
COL6A3P12111 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A3P12111 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
COL6A3P12111 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A3P12111 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A3P12111 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC18.77■□□□□ 0.6
COL6A3P12111 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A3P12111 CALY-202ENST00000368555 783 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A3P12111 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
COL6A3P12111 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC18.77■□□□□ 0.6
COL6A3P12111 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.77■□□□□ 0.6
COL6A3P12111 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
COL6A3P12111 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.77■□□□□ 0.6
COL6A3P12111 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
COL6A3P12111 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A3P12111 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A3P12111 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A3P12111 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
COL6A3P12111 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
COL6A3P12111 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.77■□□□□ 0.59
COL6A3P12111 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.77■□□□□ 0.59
COL6A3P12111 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
COL6A3P12111 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms