Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF40O75150 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF40O75150 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF40O75150 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.61■□□□□ 0.73
RNF40O75150 PCED1CP-201ENST00000419887 785 ntBASIC19.61■□□□□ 0.73
RNF40O75150 HOMER2P1-201ENST00000455653 964 ntBASIC19.61■□□□□ 0.73
RNF40O75150 AL359075.1-203ENST00000462729 1002 ntBASIC19.61■□□□□ 0.73
RNF40O75150 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.61■□□□□ 0.73
RNF40O75150 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF40O75150 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.61■□□□□ 0.73
RNF40O75150 AL121956.5-201ENST00000625261 221 ntBASIC19.61■□□□□ 0.73
RNF40O75150 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF40O75150 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
RNF40O75150 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF40O75150 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF40O75150 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.61■□□□□ 0.73
RNF40O75150 AL162741.1-201ENST00000565563 1558 ntBASIC19.61■□□□□ 0.73
RNF40O75150 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF40O75150 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
RNF40O75150 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF40O75150 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF40O75150 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
RNF40O75150 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF40O75150 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF40O75150 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF40O75150 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF40O75150 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.6■□□□□ 0.73
RNF40O75150 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF40O75150 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RNF40O75150 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF40O75150 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.6■□□□□ 0.73
RNF40O75150 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF40O75150 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF40O75150 AC009947.2-201ENST00000444014 672 ntBASIC19.6■□□□□ 0.73
RNF40O75150 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
RNF40O75150 FAM86EP-206ENST00000510506 987 ntBASIC19.6■□□□□ 0.73
RNF40O75150 AP003041.3-201ENST00000527151 707 ntBASIC19.6■□□□□ 0.73
RNF40O75150 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.6■□□□□ 0.73
RNF40O75150 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.6■□□□□ 0.73
RNF40O75150 CKBP1-201ENST00000565489 1086 ntBASIC19.6■□□□□ 0.73
RNF40O75150 AL441883.1-201ENST00000566170 1045 ntBASIC19.6■□□□□ 0.73
RNF40O75150 AC140113.3-201ENST00000605663 199 ntBASIC19.6■□□□□ 0.73
RNF40O75150 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.6■□□□□ 0.73
RNF40O75150 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF40O75150 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF40O75150 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF40O75150 GNAS-203ENST00000306120 1878 ntBASIC19.6■□□□□ 0.73
RNF40O75150 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.6■□□□□ 0.73
RNF40O75150 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
RNF40O75150 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
RNF40O75150 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF40O75150 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
RNF40O75150 ZNF815P-204ENST00000434898 1737 ntBASIC19.59■□□□□ 0.73
RNF40O75150 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.59■□□□□ 0.73
RNF40O75150 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.59■□□□□ 0.73
RNF40O75150 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.59■□□□□ 0.73
RNF40O75150 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.59■□□□□ 0.73
RNF40O75150 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.59■□□□□ 0.73
RNF40O75150 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.59■□□□□ 0.73
RNF40O75150 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.59■□□□□ 0.73
RNF40O75150 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.59■□□□□ 0.73
RNF40O75150 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
RNF40O75150 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.59■□□□□ 0.73
RNF40O75150 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.59■□□□□ 0.73
RNF40O75150 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.59■□□□□ 0.73
RNF40O75150 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.59■□□□□ 0.73
RNF40O75150 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.59■□□□□ 0.73
RNF40O75150 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.59■□□□□ 0.73
RNF40O75150 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.59■□□□□ 0.73
RNF40O75150 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.59■□□□□ 0.73
RNF40O75150 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 AC084018.2-201ENST00000613093 2607 ntBASIC19.59■□□□□ 0.73
RNF40O75150 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.59■□□□□ 0.73
RNF40O75150 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
RNF40O75150 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF40O75150 IER3-202ENST00000376377 1350 ntBASIC19.58■□□□□ 0.73
RNF40O75150 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
RNF40O75150 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RNF40O75150 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
RNF40O75150 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
RNF40O75150 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RNF40O75150 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
RNF40O75150 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.58■□□□□ 0.73
RNF40O75150 KRT8P41-201ENST00000533985 1514 ntBASIC19.58■□□□□ 0.73
RNF40O75150 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms