Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 AC068472.1-201ENST00000474589 881 ntBASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 RN7SL510P-201ENST00000581311 263 ntBASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 AP000974.1-201ENST00000623909 2387 ntBASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 BX323043.1-201ENST00000641006 1765 ntBASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLCF1Q9UBD9 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 AC073592.3-201ENST00000625118 1834 ntBASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 AC091304.2-201ENST00000564639 760 ntBASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CLCF1Q9UBD9 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 AC004870.1-201ENST00000315132 882 ntBASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLCF1Q9UBD9 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms