Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TDP1Q9NUW8 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 AL031284.1-201ENST00000419297 478 ntBASIC18.66■□□□□ 0.58
TDP1Q9NUW8 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 AC112698.1-201ENST00000510299 916 ntBASIC18.66■□□□□ 0.58
TDP1Q9NUW8 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 MTDHP3-201ENST00000594186 672 ntBASIC18.66■□□□□ 0.58
TDP1Q9NUW8 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TDP1Q9NUW8 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.65■□□□□ 0.58
TDP1Q9NUW8 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 FGFR3P6-201ENST00000457012 610 ntBASIC18.65■□□□□ 0.58
TDP1Q9NUW8 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 AP001269.4-201ENST00000609611 512 ntBASIC18.65■□□□□ 0.58
TDP1Q9NUW8 AC148477.8-201ENST00000624298 468 ntBASIC18.65■□□□□ 0.58
TDP1Q9NUW8 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.65■□□□□ 0.58
TDP1Q9NUW8 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TDP1Q9NUW8 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
TDP1Q9NUW8 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 AL031598.1-201ENST00000561511 1773 ntBASIC18.64■□□□□ 0.57
TDP1Q9NUW8 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms