Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 WWOX-216ENST00000569818 525 ntBASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 AC006116.8-202ENST00000587620 1550 ntBASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
ATG4AQ8WYN0 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 AL024508.2-201ENST00000607749 1894 ntBASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 TSPY17P-201ENST00000450329 467 ntBASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.86■□□□□ 0.61
ATG4AQ8WYN0 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 AC008550.1-201ENST00000511500 884 ntBASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ATG4AQ8WYN0 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ATG4AQ8WYN0 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms