Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
SNED1Q8TER0 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
SNED1Q8TER0 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC22.03■■□□□ 1.12
SNED1Q8TER0 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC22.03■■□□□ 1.12
SNED1Q8TER0 AC064836.3-201ENST00000607928 673 ntBASIC22.03■■□□□ 1.12
SNED1Q8TER0 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
SNED1Q8TER0 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC22.03■■□□□ 1.12
SNED1Q8TER0 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SNED1Q8TER0 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SNED1Q8TER0 PMPCAP1-201ENST00000508114 1576 ntBASIC22.03■■□□□ 1.12
SNED1Q8TER0 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
SNED1Q8TER0 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SNED1Q8TER0 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SNED1Q8TER0 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SNED1Q8TER0 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.02■■□□□ 1.12
SNED1Q8TER0 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SNED1Q8TER0 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SNED1Q8TER0 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
SNED1Q8TER0 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC22.02■■□□□ 1.12
SNED1Q8TER0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SNED1Q8TER0 ALG1L5P-201ENST00000482043 771 ntBASIC22.02■■□□□ 1.12
SNED1Q8TER0 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC22.02■■□□□ 1.12
SNED1Q8TER0 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC22.02■■□□□ 1.12
SNED1Q8TER0 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC22.02■■□□□ 1.12
SNED1Q8TER0 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC22.02■■□□□ 1.12
SNED1Q8TER0 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC22.02■■□□□ 1.12
SNED1Q8TER0 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC22.02■■□□□ 1.12
SNED1Q8TER0 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SNED1Q8TER0 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
SNED1Q8TER0 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.11
SNED1Q8TER0 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.11
SNED1Q8TER0 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC22.02■■□□□ 1.11
SNED1Q8TER0 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC22.02■■□□□ 1.11
SNED1Q8TER0 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SNED1Q8TER0 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SNED1Q8TER0 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
SNED1Q8TER0 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC22.01■■□□□ 1.11
SNED1Q8TER0 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SNED1Q8TER0 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC22.01■■□□□ 1.11
SNED1Q8TER0 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SNED1Q8TER0 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SNED1Q8TER0 AC023274.1-201ENST00000418278 595 ntBASIC22.01■■□□□ 1.11
SNED1Q8TER0 PTGES2-AS1-201ENST00000443493 2100 ntBASIC22.01■■□□□ 1.11
SNED1Q8TER0 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC22.01■■□□□ 1.11
SNED1Q8TER0 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC22.01■■□□□ 1.11
SNED1Q8TER0 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC22.01■■□□□ 1.11
SNED1Q8TER0 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
SNED1Q8TER0 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SNED1Q8TER0 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SNED1Q8TER0 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SNED1Q8TER0 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SNED1Q8TER0 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC22■■□□□ 1.11
SNED1Q8TER0 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
SNED1Q8TER0 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC22■■□□□ 1.11
SNED1Q8TER0 AL499627.1-201ENST00000569373 2188 ntBASIC22■■□□□ 1.11
SNED1Q8TER0 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
SNED1Q8TER0 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
SNED1Q8TER0 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
SNED1Q8TER0 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SNED1Q8TER0 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC22■■□□□ 1.11
SNED1Q8TER0 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SNED1Q8TER0 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC22■■□□□ 1.11
SNED1Q8TER0 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC22■■□□□ 1.11
SNED1Q8TER0 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC22■■□□□ 1.11
SNED1Q8TER0 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC22■■□□□ 1.11
SNED1Q8TER0 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC22■■□□□ 1.11
SNED1Q8TER0 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
SNED1Q8TER0 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
SNED1Q8TER0 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SNED1Q8TER0 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC22■■□□□ 1.11
SNED1Q8TER0 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
SNED1Q8TER0 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
SNED1Q8TER0 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC22■■□□□ 1.11
SNED1Q8TER0 SIGLEC16-201ENST00000599858 1437 ntBASIC22■■□□□ 1.11
SNED1Q8TER0 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SNED1Q8TER0 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
SNED1Q8TER0 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC22■■□□□ 1.11
SNED1Q8TER0 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
SNED1Q8TER0 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SNED1Q8TER0 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
SNED1Q8TER0 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SNED1Q8TER0 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC21.99■■□□□ 1.11
SNED1Q8TER0 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
SNED1Q8TER0 MCCD1P2-201ENST00000423228 335 ntBASIC21.99■■□□□ 1.11
SNED1Q8TER0 MIR3687-2-201ENST00000577708 61 ntBASIC21.99■■□□□ 1.11
SNED1Q8TER0 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC21.99■■□□□ 1.11
SNED1Q8TER0 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
SNED1Q8TER0 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC21.99■■□□□ 1.11
SNED1Q8TER0 MIR3687-1-201ENST00000614492 61 ntBASIC21.99■■□□□ 1.11
SNED1Q8TER0 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SNED1Q8TER0 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SNED1Q8TER0 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SNED1Q8TER0 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
SNED1Q8TER0 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
SNED1Q8TER0 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.99■■□□□ 1.11
SNED1Q8TER0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.99■■□□□ 1.11
SNED1Q8TER0 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.99■■□□□ 1.11
SNED1Q8TER0 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
SNED1Q8TER0 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SNED1Q8TER0 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms