Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.03■□□□□ 0.96
SF3A1Q15459 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SF3A1Q15459 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.03■□□□□ 0.96
SF3A1Q15459 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SF3A1Q15459 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SF3A1Q15459 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SF3A1Q15459 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SF3A1Q15459 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC21.02■□□□□ 0.96
SF3A1Q15459 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SF3A1Q15459 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
SF3A1Q15459 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SF3A1Q15459 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SF3A1Q15459 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.02■□□□□ 0.96
SF3A1Q15459 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SF3A1Q15459 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC21.02■□□□□ 0.96
SF3A1Q15459 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.02■□□□□ 0.96
SF3A1Q15459 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SF3A1Q15459 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SF3A1Q15459 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SF3A1Q15459 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.02■□□□□ 0.96
SF3A1Q15459 TSPY14P-201ENST00000303979 915 ntBASIC21.02■□□□□ 0.96
SF3A1Q15459 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SF3A1Q15459 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.02■□□□□ 0.96
SF3A1Q15459 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.02■□□□□ 0.96
SF3A1Q15459 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SF3A1Q15459 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.02■□□□□ 0.96
SF3A1Q15459 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SF3A1Q15459 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.02■□□□□ 0.96
SF3A1Q15459 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SF3A1Q15459 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC21.02■□□□□ 0.96
SF3A1Q15459 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC21.02■□□□□ 0.96
SF3A1Q15459 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SF3A1Q15459 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC21.02■□□□□ 0.96
SF3A1Q15459 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC21.02■□□□□ 0.95
SF3A1Q15459 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.02■□□□□ 0.95
SF3A1Q15459 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SF3A1Q15459 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
SF3A1Q15459 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
SF3A1Q15459 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC21.02■□□□□ 0.95
SF3A1Q15459 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
SF3A1Q15459 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SF3A1Q15459 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SF3A1Q15459 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SF3A1Q15459 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SF3A1Q15459 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SF3A1Q15459 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SF3A1Q15459 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SF3A1Q15459 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SF3A1Q15459 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SF3A1Q15459 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SF3A1Q15459 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SF3A1Q15459 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SF3A1Q15459 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.01■□□□□ 0.95
SF3A1Q15459 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC21.01■□□□□ 0.95
SF3A1Q15459 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SF3A1Q15459 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC21.01■□□□□ 0.95
SF3A1Q15459 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SF3A1Q15459 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SF3A1Q15459 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SF3A1Q15459 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
SF3A1Q15459 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SF3A1Q15459 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21■□□□□ 0.95
SF3A1Q15459 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC21■□□□□ 0.95
SF3A1Q15459 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC21■□□□□ 0.95
SF3A1Q15459 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC21■□□□□ 0.95
SF3A1Q15459 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SF3A1Q15459 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21■□□□□ 0.95
SF3A1Q15459 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21■□□□□ 0.95
SF3A1Q15459 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SF3A1Q15459 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
SF3A1Q15459 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SF3A1Q15459 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21■□□□□ 0.95
SF3A1Q15459 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SF3A1Q15459 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SF3A1Q15459 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC21■□□□□ 0.95
SF3A1Q15459 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC21■□□□□ 0.95
SF3A1Q15459 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SF3A1Q15459 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
SF3A1Q15459 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SF3A1Q15459 AL096828.2-201ENST00000567259 1965 ntBASIC20.99■□□□□ 0.95
SF3A1Q15459 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.99■□□□□ 0.95
SF3A1Q15459 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SF3A1Q15459 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.99■□□□□ 0.95
SF3A1Q15459 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
SF3A1Q15459 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SF3A1Q15459 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC20.99■□□□□ 0.95
SF3A1Q15459 KRT8P7-201ENST00000533003 1432 ntBASIC20.99■□□□□ 0.95
SF3A1Q15459 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SF3A1Q15459 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
SF3A1Q15459 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SF3A1Q15459 EGLN1P1-201ENST00000531623 762 ntBASIC20.99■□□□□ 0.95
SF3A1Q15459 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.99■□□□□ 0.95
SF3A1Q15459 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SF3A1Q15459 AC010947.1-201ENST00000623454 693 ntBASIC20.99■□□□□ 0.95
SF3A1Q15459 AC010653.2-201ENST00000623505 997 ntBASIC20.99■□□□□ 0.95
SF3A1Q15459 PHGDH-209ENST00000641074 1780 ntBASIC20.99■□□□□ 0.95
SF3A1Q15459 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SF3A1Q15459 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.99■□□□□ 0.95
SF3A1Q15459 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SF3A1Q15459 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms