Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.66■□□□□ 0.42
HNF4AP41235 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
HNF4AP41235 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.66■□□□□ 0.42
HNF4AP41235 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HNF4AP41235 SEC1P-202ENST00000473944 940 ntBASIC17.66■□□□□ 0.42
HNF4AP41235 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.66■□□□□ 0.42
HNF4AP41235 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 AC139887.4-201ENST00000607877 719 ntBASIC17.66■□□□□ 0.42
HNF4AP41235 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.66■□□□□ 0.42
HNF4AP41235 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.66■□□□□ 0.42
HNF4AP41235 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.66■□□□□ 0.42
HNF4AP41235 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.66■□□□□ 0.42
HNF4AP41235 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.66■□□□□ 0.42
HNF4AP41235 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.66■□□□□ 0.42
HNF4AP41235 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.66■□□□□ 0.42
HNF4AP41235 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.66■□□□□ 0.42
HNF4AP41235 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HNF4AP41235 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
HNF4AP41235 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HNF4AP41235 AC073508.3-201ENST00000619697 1419 ntBASIC17.65■□□□□ 0.42
HNF4AP41235 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.65■□□□□ 0.42
HNF4AP41235 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HNF4AP41235 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
HNF4AP41235 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HNF4AP41235 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
HNF4AP41235 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HNF4AP41235 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HNF4AP41235 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.65■□□□□ 0.42
HNF4AP41235 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
HNF4AP41235 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.65■□□□□ 0.42
HNF4AP41235 RN7SL850P-201ENST00000579959 291 ntBASIC17.65■□□□□ 0.42
HNF4AP41235 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.65■□□□□ 0.42
HNF4AP41235 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HNF4AP41235 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HNF4AP41235 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.65■□□□□ 0.42
HNF4AP41235 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HNF4AP41235 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HNF4AP41235 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HNF4AP41235 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.65■□□□□ 0.42
HNF4AP41235 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HNF4AP41235 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.64■□□□□ 0.42
HNF4AP41235 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
HNF4AP41235 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 PHGDH-209ENST00000641074 1780 ntBASIC17.64■□□□□ 0.41
HNF4AP41235 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
HNF4AP41235 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.64■□□□□ 0.41
HNF4AP41235 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
HNF4AP41235 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 RCN1P1-201ENST00000400413 996 ntBASIC17.64■□□□□ 0.41
HNF4AP41235 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.64■□□□□ 0.41
HNF4AP41235 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.64■□□□□ 0.41
HNF4AP41235 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.64■□□□□ 0.41
HNF4AP41235 COX11P1-201ENST00000489116 835 ntBASIC17.64■□□□□ 0.41
HNF4AP41235 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
HNF4AP41235 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
HNF4AP41235 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.64■□□□□ 0.41
HNF4AP41235 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.64■□□□□ 0.41
HNF4AP41235 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.64■□□□□ 0.41
HNF4AP41235 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.64■□□□□ 0.41
HNF4AP41235 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
HNF4AP41235 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
HNF4AP41235 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
HNF4AP41235 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HNF4AP41235 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HNF4AP41235 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HNF4AP41235 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HNF4AP41235 AC138028.4-201ENST00000564984 1845 ntBASIC17.63■□□□□ 0.41
HNF4AP41235 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms