Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
UBFD1O14562 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
UBFD1O14562 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
UBFD1O14562 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UBFD1O14562 AC141586.5-201ENST00000624546 2050 ntBASIC17.65■□□□□ 0.42
UBFD1O14562 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
UBFD1O14562 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UBFD1O14562 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UBFD1O14562 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
UBFD1O14562 MIR1238-201ENST00000408483 83 ntBASIC17.65■□□□□ 0.42
UBFD1O14562 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
UBFD1O14562 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.65■□□□□ 0.42
UBFD1O14562 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
UBFD1O14562 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
UBFD1O14562 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.65■□□□□ 0.42
UBFD1O14562 MIR3180-4-201ENST00000582223 153 ntBASIC17.65■□□□□ 0.42
UBFD1O14562 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UBFD1O14562 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.65■□□□□ 0.42
UBFD1O14562 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UBFD1O14562 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.65■□□□□ 0.42
UBFD1O14562 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UBFD1O14562 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
UBFD1O14562 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
UBFD1O14562 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UBFD1O14562 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UBFD1O14562 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UBFD1O14562 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.65■□□□□ 0.42
UBFD1O14562 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
UBFD1O14562 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UBFD1O14562 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
UBFD1O14562 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.65■□□□□ 0.42
UBFD1O14562 AC080080.1-201ENST00000625121 2420 ntBASIC17.64■□□□□ 0.42
UBFD1O14562 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.64■□□□□ 0.42
UBFD1O14562 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
UBFD1O14562 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
UBFD1O14562 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UBFD1O14562 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
UBFD1O14562 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.64■□□□□ 0.41
UBFD1O14562 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UBFD1O14562 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
UBFD1O14562 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
UBFD1O14562 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
UBFD1O14562 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.64■□□□□ 0.41
UBFD1O14562 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UBFD1O14562 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.64■□□□□ 0.41
UBFD1O14562 AC010240.3-201ENST00000607688 395 ntBASIC17.64■□□□□ 0.41
UBFD1O14562 AC116562.4-202ENST00000641738 218 ntBASIC17.64■□□□□ 0.41
UBFD1O14562 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
UBFD1O14562 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
UBFD1O14562 AC100803.2-201ENST00000562459 1963 ntBASIC17.64■□□□□ 0.41
UBFD1O14562 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
UBFD1O14562 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
UBFD1O14562 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.63■□□□□ 0.41
UBFD1O14562 AC012313.1-201ENST00000593393 3059 ntBASIC17.63■□□□□ 0.41
UBFD1O14562 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.63■□□□□ 0.41
UBFD1O14562 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
UBFD1O14562 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.63■□□□□ 0.41
UBFD1O14562 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
UBFD1O14562 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
UBFD1O14562 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
UBFD1O14562 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.63■□□□□ 0.41
UBFD1O14562 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
UBFD1O14562 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
UBFD1O14562 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.63■□□□□ 0.41
UBFD1O14562 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
UBFD1O14562 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.63■□□□□ 0.41
UBFD1O14562 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.63■□□□□ 0.41
UBFD1O14562 AC093827.2-201ENST00000512654 315 ntBASIC17.63■□□□□ 0.41
UBFD1O14562 MIR4785-201ENST00000585005 73 ntBASIC17.63■□□□□ 0.41
UBFD1O14562 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
UBFD1O14562 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
UBFD1O14562 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.63■□□□□ 0.41
UBFD1O14562 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
UBFD1O14562 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.63■□□□□ 0.41
UBFD1O14562 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.63■□□□□ 0.41
UBFD1O14562 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.63■□□□□ 0.41
UBFD1O14562 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
UBFD1O14562 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
UBFD1O14562 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
UBFD1O14562 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
UBFD1O14562 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.62■□□□□ 0.41
UBFD1O14562 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
UBFD1O14562 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
UBFD1O14562 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.62■□□□□ 0.41
UBFD1O14562 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
UBFD1O14562 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.62■□□□□ 0.41
UBFD1O14562 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
UBFD1O14562 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.62■□□□□ 0.41
UBFD1O14562 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
UBFD1O14562 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.62■□□□□ 0.41
UBFD1O14562 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
UBFD1O14562 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.62■□□□□ 0.41
UBFD1O14562 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.62■□□□□ 0.41
UBFD1O14562 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
UBFD1O14562 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.62■□□□□ 0.41
UBFD1O14562 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.62■□□□□ 0.41
UBFD1O14562 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.62■□□□□ 0.41
UBFD1O14562 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.62■□□□□ 0.41
UBFD1O14562 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.62■□□□□ 0.41
UBFD1O14562 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms