Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 AC128688.1-201ENST00000487626 519 ntBASIC16.29■□□□□ 0.2
VSX1Q9NZR4 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 INGX-201ENST00000359239 846 ntBASIC16.28■□□□□ 0.2
VSX1Q9NZR4 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.28■□□□□ 0.2
VSX1Q9NZR4 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 CYP2D8P-201ENST00000433633 1490 ntBASIC16.28■□□□□ 0.2
VSX1Q9NZR4 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VSX1Q9NZR4 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 AC099343.3-201ENST00000605834 2503 ntBASIC16.27■□□□□ 0.2
VSX1Q9NZR4 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 AC093010.1-201ENST00000473625 1624 ntBASIC16.27■□□□□ 0.2
VSX1Q9NZR4 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 TSPY15P-201ENST00000457163 923 ntBASIC16.27■□□□□ 0.2
VSX1Q9NZR4 NAPSB-206ENST00000562112 1266 ntBASIC16.27■□□□□ 0.2
VSX1Q9NZR4 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 AC010947.1-201ENST00000623454 693 ntBASIC16.27■□□□□ 0.2
VSX1Q9NZR4 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.27■□□□□ 0.2
VSX1Q9NZR4 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
VSX1Q9NZR4 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VSX1Q9NZR4 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.27■□□□□ 0.19
VSX1Q9NZR4 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VSX1Q9NZR4 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VSX1Q9NZR4 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
VSX1Q9NZR4 KRT8P9-201ENST00000558927 1449 ntBASIC16.27■□□□□ 0.19
VSX1Q9NZR4 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VSX1Q9NZR4 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VSX1Q9NZR4 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VSX1Q9NZR4 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VSX1Q9NZR4 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms