Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
CCDC42Q96M95 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.67■□□□□ 0.74
CCDC42Q96M95 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC42Q96M95 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CCDC42Q96M95 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC42Q96M95 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CCDC42Q96M95 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CCDC42Q96M95 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
CCDC42Q96M95 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC42Q96M95 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC42Q96M95 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CCDC42Q96M95 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC42Q96M95 MIR149-201ENST00000384879 89 ntBASIC19.67■□□□□ 0.74
CCDC42Q96M95 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CCDC42Q96M95 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC42Q96M95 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.67■□□□□ 0.74
CCDC42Q96M95 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC42Q96M95 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC42Q96M95 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC42Q96M95 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC42Q96M95 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CCDC42Q96M95 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC42Q96M95 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CCDC42Q96M95 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC42Q96M95 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CCDC42Q96M95 AC139713.2-201ENST00000641328 2723 ntBASIC19.67■□□□□ 0.74
CCDC42Q96M95 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC42Q96M95 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 AC036111.1-201ENST00000533973 1582 ntBASIC19.66■□□□□ 0.74
CCDC42Q96M95 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 CD99P1-205ENST00000527459 561 ntBASIC19.66■□□□□ 0.74
CCDC42Q96M95 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 AL359736.2-201ENST00000621992 437 ntBASIC19.66■□□□□ 0.74
CCDC42Q96M95 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC42Q96M95 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CCDC42Q96M95 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC42Q96M95 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC42Q96M95 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC42Q96M95 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC42Q96M95 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC42Q96M95 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 AC116562.2-201ENST00000507042 360 ntBASIC19.65■□□□□ 0.74
CCDC42Q96M95 AC097488.1-201ENST00000507834 756 ntBASIC19.65■□□□□ 0.74
CCDC42Q96M95 MIR4651-201ENST00000582622 73 ntBASIC19.65■□□□□ 0.74
CCDC42Q96M95 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC42Q96M95 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC42Q96M95 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC42Q96M95 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC42Q96M95 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.74
CCDC42Q96M95 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
CCDC42Q96M95 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC42Q96M95 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC42Q96M95 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms