Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLHC1Q8NHS4 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.52■□□□□ 0.4
CLHC1Q8NHS4 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.52■□□□□ 0.4
CLHC1Q8NHS4 AL023803.3-201ENST00000615559 522 ntBASIC17.52■□□□□ 0.4
CLHC1Q8NHS4 CR769767.2-201ENST00000622735 460 ntBASIC17.52■□□□□ 0.4
CLHC1Q8NHS4 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.52■□□□□ 0.4
CLHC1Q8NHS4 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLHC1Q8NHS4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
CLHC1Q8NHS4 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLHC1Q8NHS4 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CLHC1Q8NHS4 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLHC1Q8NHS4 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLHC1Q8NHS4 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLHC1Q8NHS4 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.52■□□□□ 0.39
CLHC1Q8NHS4 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CLHC1Q8NHS4 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLHC1Q8NHS4 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
CLHC1Q8NHS4 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLHC1Q8NHS4 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLHC1Q8NHS4 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 AC009102.3-201ENST00000623118 1491 ntBASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 MIR1238-201ENST00000408483 83 ntBASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLHC1Q8NHS4 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 SNORA78-201ENST00000459373 127 ntBASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 AL353719.1-201ENST00000566847 864 ntBASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 MIR4785-201ENST00000585005 73 ntBASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.49■□□□□ 0.39
CLHC1Q8NHS4 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms