Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 AC112777.1-201ENST00000540175 1423 ntBASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 TSPY23P-201ENST00000440136 739 ntBASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 AL121906.2-201ENST00000621597 723 ntBASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 AC073912.3-201ENST00000624414 853 ntBASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZNF540Q8NDQ6 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
ZNF540Q8NDQ6 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
ZNF540Q8NDQ6 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
ZNF540Q8NDQ6 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 MDFI-202ENST00000373050 809 ntTSL 2 BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 KRASP1-201ENST00000407852 552 ntBASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 SNORA78-201ENST00000459373 127 ntBASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZNF540Q8NDQ6 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 FLJ13224-201ENST00000313737 1514 ntBASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 RARRES2P10-201ENST00000564312 460 ntBASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 AL121829.2-201ENST00000620908 328 ntBASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms