Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 AP005117.1-201ENST00000584346 1413 ntBASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 CSF3-203ENST00000394148 622 ntTSL 3 BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 KRT18P13-201ENST00000400056 1290 ntBASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 RPS2P1-201ENST00000434010 821 ntBASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
USHBP1Q8N6Y0 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC23.94■■□□□ 1.42
USHBP1Q8N6Y0 ANO7L1-203ENST00000602586 1720 ntBASIC23.94■■□□□ 1.42
USHBP1Q8N6Y0 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
USHBP1Q8N6Y0 SCARNA2-201ENST00000458748 420 ntBASIC23.94■■□□□ 1.42
USHBP1Q8N6Y0 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC23.94■■□□□ 1.42
USHBP1Q8N6Y0 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC23.94■■□□□ 1.42
USHBP1Q8N6Y0 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC23.94■■□□□ 1.42
USHBP1Q8N6Y0 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC23.94■■□□□ 1.42
USHBP1Q8N6Y0 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USHBP1Q8N6Y0 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
USHBP1Q8N6Y0 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USHBP1Q8N6Y0 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 AC092865.5-201ENST00000545435 363 ntBASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 AC012640.2-201ENST00000561606 901 ntBASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USHBP1Q8N6Y0 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
USHBP1Q8N6Y0 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USHBP1Q8N6Y0 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USHBP1Q8N6Y0 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USHBP1Q8N6Y0 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USHBP1Q8N6Y0 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USHBP1Q8N6Y0 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC23.92■■□□□ 1.42
USHBP1Q8N6Y0 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC23.92■■□□□ 1.42
USHBP1Q8N6Y0 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC23.92■■□□□ 1.42
USHBP1Q8N6Y0 PIN1-206ENST00000587625 878 ntTSL 2 BASIC23.92■■□□□ 1.42
USHBP1Q8N6Y0 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USHBP1Q8N6Y0 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USHBP1Q8N6Y0 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC23.92■■□□□ 1.42
USHBP1Q8N6Y0 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 FABP5-202ENST00000396359 986 ntTSL 5 BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 KRT18P65-201ENST00000439811 1286 ntBASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 ABCD1P5-201ENST00000445663 754 ntBASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 AC112698.1-201ENST00000510299 916 ntBASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC23.91■■□□□ 1.42
USHBP1Q8N6Y0 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 AC117500.6-201ENST00000624871 588 ntBASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms