Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
ABCA4P78363 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ABCA4P78363 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ABCA4P78363 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
ABCA4P78363 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
ABCA4P78363 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ABCA4P78363 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ABCA4P78363 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ABCA4P78363 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ABCA4P78363 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.65■□□□□ 0.1
ABCA4P78363 AC055717.3-201ENST00000622967 595 ntBASIC15.65■□□□□ 0.1
ABCA4P78363 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
ABCA4P78363 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ABCA4P78363 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
ABCA4P78363 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC15.65■□□□□ 0.1
ABCA4P78363 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ABCA4P78363 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC15.64■□□□□ 0.1
ABCA4P78363 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA4P78363 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA4P78363 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA4P78363 NARF-204ENST00000390006 1766 ntTSL 2 BASIC15.64■□□□□ 0.09
ABCA4P78363 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC15.64■□□□□ 0.09
ABCA4P78363 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC15.64■□□□□ 0.09
ABCA4P78363 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA4P78363 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.64■□□□□ 0.09
ABCA4P78363 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
ABCA4P78363 DANCR-204ENST00000444958 709 ntTSL 3 BASIC15.64■□□□□ 0.09
ABCA4P78363 AC132008.2-207ENST00000454517 770 ntBASIC15.64■□□□□ 0.09
ABCA4P78363 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC15.64■□□□□ 0.09
ABCA4P78363 AC010327.4-202ENST00000591484 748 ntBASIC15.64■□□□□ 0.09
ABCA4P78363 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA4P78363 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA4P78363 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
ABCA4P78363 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA4P78363 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA4P78363 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC15.64■□□□□ 0.09
ABCA4P78363 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA4P78363 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA4P78363 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA4P78363 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
ABCA4P78363 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.64■□□□□ 0.09
ABCA4P78363 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA4P78363 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC15.64■□□□□ 0.09
ABCA4P78363 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.64■□□□□ 0.09
ABCA4P78363 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA4P78363 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA4P78363 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA4P78363 COBL-210ENST00000632460 1941 ntTSL 5 BASIC15.64■□□□□ 0.09
ABCA4P78363 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA4P78363 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA4P78363 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC15.63■□□□□ 0.09
ABCA4P78363 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA4P78363 AL024508.2-201ENST00000607749 1894 ntBASIC15.63■□□□□ 0.09
ABCA4P78363 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC15.63■□□□□ 0.09
ABCA4P78363 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA4P78363 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC15.63■□□□□ 0.09
ABCA4P78363 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.63■□□□□ 0.09
ABCA4P78363 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC15.63■□□□□ 0.09
ABCA4P78363 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA4P78363 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC15.63■□□□□ 0.09
ABCA4P78363 SNAI3-AS1-205ENST00000568633 2096 ntBASIC15.63■□□□□ 0.09
ABCA4P78363 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA4P78363 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.63■□□□□ 0.09
ABCA4P78363 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.63■□□□□ 0.09
ABCA4P78363 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.63■□□□□ 0.09
ABCA4P78363 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA4P78363 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.63■□□□□ 0.09
ABCA4P78363 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC15.63■□□□□ 0.09
ABCA4P78363 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA4P78363 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA4P78363 AL161938.1-201ENST00000569833 2180 ntBASIC15.63■□□□□ 0.09
ABCA4P78363 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC15.63■□□□□ 0.09
ABCA4P78363 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
ABCA4P78363 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA4P78363 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA4P78363 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA4P78363 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
ABCA4P78363 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA4P78363 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA4P78363 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC15.63■□□□□ 0.09
ABCA4P78363 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA4P78363 RBM17P3-201ENST00000417687 1192 ntBASIC15.63■□□□□ 0.09
ABCA4P78363 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC15.63■□□□□ 0.09
ABCA4P78363 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC15.63■□□□□ 0.09
ABCA4P78363 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.63■□□□□ 0.09
ABCA4P78363 MIR5100-201ENST00000579544 119 ntBASIC15.63■□□□□ 0.09
ABCA4P78363 GZMM-202ENST00000592501 941 ntTSL 3 BASIC15.63■□□□□ 0.09
ABCA4P78363 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC15.62■□□□□ 0.09
ABCA4P78363 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA4P78363 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC15.62■□□□□ 0.09
ABCA4P78363 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA4P78363 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA4P78363 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA4P78363 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC15.62■□□□□ 0.09
ABCA4P78363 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
ABCA4P78363 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC15.62■□□□□ 0.09
ABCA4P78363 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA4P78363 UROS-202ENST00000368778 1556 ntTSL 2 BASIC15.62■□□□□ 0.09
ABCA4P78363 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
ABCA4P78363 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms