Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC22.87■■□□□ 1.25
COL5A3P25940 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC22.87■■□□□ 1.25
COL5A3P25940 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC22.87■■□□□ 1.25
COL5A3P25940 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC22.87■■□□□ 1.25
COL5A3P25940 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
COL5A3P25940 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
COL5A3P25940 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
COL5A3P25940 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL5A3P25940 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
COL5A3P25940 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL5A3P25940 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.86■■□□□ 1.25
COL5A3P25940 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL5A3P25940 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
COL5A3P25940 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC22.86■■□□□ 1.25
COL5A3P25940 METTL21AP1-201ENST00000438852 635 ntBASIC22.86■■□□□ 1.25
COL5A3P25940 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
COL5A3P25940 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
COL5A3P25940 AC006557.2-201ENST00000592985 1240 ntBASIC22.86■■□□□ 1.25
COL5A3P25940 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC22.86■■□□□ 1.25
COL5A3P25940 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL5A3P25940 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
COL5A3P25940 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC22.86■■□□□ 1.25
COL5A3P25940 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL5A3P25940 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
COL5A3P25940 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC22.86■■□□□ 1.25
COL5A3P25940 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
COL5A3P25940 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC22.85■■□□□ 1.25
COL5A3P25940 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC22.85■■□□□ 1.25
COL5A3P25940 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC22.85■■□□□ 1.25
COL5A3P25940 SRP19-202ENST00000445150 833 ntTSL 2 BASIC22.85■■□□□ 1.25
COL5A3P25940 AC136632.2-201ENST00000512891 861 ntBASIC22.85■■□□□ 1.25
COL5A3P25940 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC22.85■■□□□ 1.25
COL5A3P25940 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL5A3P25940 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC22.85■■□□□ 1.25
COL5A3P25940 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL5A3P25940 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL5A3P25940 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC22.85■■□□□ 1.25
COL5A3P25940 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL5A3P25940 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC22.85■■□□□ 1.25
COL5A3P25940 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
COL5A3P25940 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL5A3P25940 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC22.85■■□□□ 1.25
COL5A3P25940 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL5A3P25940 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC22.85■■□□□ 1.25
COL5A3P25940 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC22.85■■□□□ 1.25
COL5A3P25940 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL5A3P25940 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL5A3P25940 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL5A3P25940 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL5A3P25940 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC22.84■■□□□ 1.25
COL5A3P25940 KLF4P1-201ENST00000412782 1185 ntBASIC22.84■■□□□ 1.25
COL5A3P25940 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC22.84■■□□□ 1.25
COL5A3P25940 AC108073.2-201ENST00000464002 357 ntBASIC22.84■■□□□ 1.25
COL5A3P25940 AC122714.2-201ENST00000502787 707 ntBASIC22.84■■□□□ 1.25
COL5A3P25940 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC22.84■■□□□ 1.25
COL5A3P25940 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC22.84■■□□□ 1.25
COL5A3P25940 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC22.84■■□□□ 1.25
COL5A3P25940 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC22.84■■□□□ 1.25
COL5A3P25940 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC22.84■■□□□ 1.25
COL5A3P25940 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC22.84■■□□□ 1.25
COL5A3P25940 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
COL5A3P25940 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
COL5A3P25940 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL5A3P25940 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
COL5A3P25940 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC22.84■■□□□ 1.25
COL5A3P25940 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC22.84■■□□□ 1.25
COL5A3P25940 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL5A3P25940 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.84■■□□□ 1.25
COL5A3P25940 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC22.83■■□□□ 1.25
COL5A3P25940 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
COL5A3P25940 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC22.83■■□□□ 1.25
COL5A3P25940 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC22.83■■□□□ 1.25
COL5A3P25940 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC22.83■■□□□ 1.25
COL5A3P25940 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC22.83■■□□□ 1.25
COL5A3P25940 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL5A3P25940 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL5A3P25940 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL5A3P25940 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.25
COL5A3P25940 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
COL5A3P25940 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC22.83■■□□□ 1.25
COL5A3P25940 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL5A3P25940 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC22.83■■□□□ 1.25
COL5A3P25940 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
COL5A3P25940 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC22.83■■□□□ 1.24
COL5A3P25940 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
COL5A3P25940 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
COL5A3P25940 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL5A3P25940 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL5A3P25940 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL5A3P25940 MCCD1P2-201ENST00000423228 335 ntBASIC22.82■■□□□ 1.24
COL5A3P25940 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC22.82■■□□□ 1.24
COL5A3P25940 YBX1P5-201ENST00000509441 847 ntBASIC22.82■■□□□ 1.24
COL5A3P25940 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC22.82■■□□□ 1.24
COL5A3P25940 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC22.82■■□□□ 1.24
COL5A3P25940 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC22.82■■□□□ 1.24
COL5A3P25940 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
COL5A3P25940 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC22.82■■□□□ 1.24
COL5A3P25940 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
COL5A3P25940 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
COL5A3P25940 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC22.82■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms