Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
LDB3O75112 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDB3O75112 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LDB3O75112 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDB3O75112 SPDYE13P-201ENST00000445314 798 ntBASIC17.15■□□□□ 0.34
LDB3O75112 ZNF444P1-201ENST00000559497 298 ntBASIC17.15■□□□□ 0.34
LDB3O75112 AL445228.2-201ENST00000605589 952 ntBASIC17.15■□□□□ 0.34
LDB3O75112 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
LDB3O75112 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
LDB3O75112 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDB3O75112 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.15■□□□□ 0.34
LDB3O75112 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDB3O75112 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDB3O75112 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDB3O75112 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDB3O75112 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
LDB3O75112 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDB3O75112 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
LDB3O75112 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LDB3O75112 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
LDB3O75112 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
LDB3O75112 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.14■□□□□ 0.34
LDB3O75112 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LDB3O75112 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDB3O75112 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.14■□□□□ 0.33
LDB3O75112 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDB3O75112 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDB3O75112 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
LDB3O75112 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LDB3O75112 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
LDB3O75112 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.14■□□□□ 0.33
LDB3O75112 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
LDB3O75112 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.14■□□□□ 0.33
LDB3O75112 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.14■□□□□ 0.33
LDB3O75112 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.14■□□□□ 0.33
LDB3O75112 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
LDB3O75112 AC024563.2-201ENST00000603282 481 ntBASIC17.14■□□□□ 0.33
LDB3O75112 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LDB3O75112 AC135050.7-201ENST00000624508 2218 ntBASIC17.14■□□□□ 0.33
LDB3O75112 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
LDB3O75112 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDB3O75112 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDB3O75112 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.14■□□□□ 0.33
LDB3O75112 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LDB3O75112 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDB3O75112 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.14■□□□□ 0.33
LDB3O75112 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LDB3O75112 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDB3O75112 HTR7P1-202ENST00000624664 4411 ntBASIC17.14■□□□□ 0.33
LDB3O75112 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDB3O75112 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.13■□□□□ 0.33
LDB3O75112 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
LDB3O75112 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.13■□□□□ 0.33
LDB3O75112 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.13■□□□□ 0.33
LDB3O75112 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.13■□□□□ 0.33
LDB3O75112 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.13■□□□□ 0.33
LDB3O75112 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LDB3O75112 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.13■□□□□ 0.33
LDB3O75112 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.13■□□□□ 0.33
LDB3O75112 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.13■□□□□ 0.33
LDB3O75112 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.13■□□□□ 0.33
LDB3O75112 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.13■□□□□ 0.33
LDB3O75112 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.13■□□□□ 0.33
LDB3O75112 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.13■□□□□ 0.33
LDB3O75112 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.13■□□□□ 0.33
LDB3O75112 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
LDB3O75112 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.13■□□□□ 0.33
LDB3O75112 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 AC007613.1-201ENST00000572811 2597 ntBASIC17.13■□□□□ 0.33
LDB3O75112 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDB3O75112 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.12■□□□□ 0.33
LDB3O75112 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 AL162741.1-201ENST00000565563 1558 ntBASIC17.12■□□□□ 0.33
LDB3O75112 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms