Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.13■□□□□ 0.17
SGCEO43556 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.13■□□□□ 0.17
SGCEO43556 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.13■□□□□ 0.17
SGCEO43556 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.13■□□□□ 0.17
SGCEO43556 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.13■□□□□ 0.17
SGCEO43556 AC009065.1-201ENST00000564055 1225 ntBASIC16.13■□□□□ 0.17
SGCEO43556 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.13■□□□□ 0.17
SGCEO43556 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.13■□□□□ 0.17
SGCEO43556 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
SGCEO43556 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SGCEO43556 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.13■□□□□ 0.17
SGCEO43556 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.13■□□□□ 0.17
SGCEO43556 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.13■□□□□ 0.17
SGCEO43556 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.13■□□□□ 0.17
SGCEO43556 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 AL163051.1-201ENST00000569214 1512 ntBASIC16.13■□□□□ 0.17
SGCEO43556 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.13■□□□□ 0.17
SGCEO43556 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SGCEO43556 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SGCEO43556 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SGCEO43556 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.13■□□□□ 0.17
SGCEO43556 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.12■□□□□ 0.17
SGCEO43556 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
SGCEO43556 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
SGCEO43556 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.12■□□□□ 0.17
SGCEO43556 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 AC009947.2-201ENST00000444014 672 ntBASIC16.12■□□□□ 0.17
SGCEO43556 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.12■□□□□ 0.17
SGCEO43556 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.12■□□□□ 0.17
SGCEO43556 AC145285.6-201ENST00000604632 637 ntBASIC16.12■□□□□ 0.17
SGCEO43556 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
SGCEO43556 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SGCEO43556 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.12■□□□□ 0.17
SGCEO43556 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.12■□□□□ 0.17
SGCEO43556 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.12■□□□□ 0.17
SGCEO43556 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SGCEO43556 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.11■□□□□ 0.17
SGCEO43556 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.11■□□□□ 0.17
SGCEO43556 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 AL390961.4-201ENST00000623958 2535 ntBASIC16.11■□□□□ 0.17
SGCEO43556 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.11■□□□□ 0.17
SGCEO43556 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
SGCEO43556 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.11■□□□□ 0.17
SGCEO43556 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
SGCEO43556 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.11■□□□□ 0.17
SGCEO43556 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.11■□□□□ 0.17
SGCEO43556 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
SGCEO43556 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.11■□□□□ 0.17
SGCEO43556 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.11■□□□□ 0.17
SGCEO43556 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
SGCEO43556 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SGCEO43556 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SGCEO43556 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms