Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 AL139384.1-201ENST00000612143 3047 ntBASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 AC131212.4-201ENST00000623606 975 ntBASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
TCRBV3S1A0A5B6 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 BCL2-203ENST00000589955 5011 ntBASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 CKBP1-201ENST00000565489 1086 ntBASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 AC022517.1-201ENST00000592429 346 ntBASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.06■□□□□ 0.32
TCRBV3S1A0A5B6 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 AC009102.3-201ENST00000623118 1491 ntBASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 AC008622.2-201ENST00000617006 1229 ntBASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 AL163051.1-201ENST00000569214 1512 ntBASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.05■□□□□ 0.32
TCRBV3S1A0A5B6 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TCRBV3S1A0A5B6 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.04■□□□□ 0.32
TCRBV3S1A0A5B6 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.04■□□□□ 0.32
TCRBV3S1A0A5B6 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms