Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP3Q9Y6I4 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP3Q9Y6I4 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP3Q9Y6I4 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
USP3Q9Y6I4 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP3Q9Y6I4 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP3Q9Y6I4 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.04■□□□□ 0.64
USP3Q9Y6I4 AP002414.4-201ENST00000589764 1148 ntBASIC19.04■□□□□ 0.64
USP3Q9Y6I4 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.04■□□□□ 0.64
USP3Q9Y6I4 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP3Q9Y6I4 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.04■□□□□ 0.64
USP3Q9Y6I4 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP3Q9Y6I4 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP3Q9Y6I4 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 AC093677.2-201ENST00000600169 1863 ntBASIC19.03■□□□□ 0.64
USP3Q9Y6I4 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 GUSBP12-201ENST00000513727 720 ntBASIC19.03■□□□□ 0.64
USP3Q9Y6I4 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 AC092119.3-201ENST00000612618 583 ntBASIC19.03■□□□□ 0.64
USP3Q9Y6I4 IGHV3-41-201ENST00000613121 348 ntBASIC19.03■□□□□ 0.64
USP3Q9Y6I4 AC135776.1-201ENST00000319817 2481 ntBASIC19.03■□□□□ 0.64
USP3Q9Y6I4 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP3Q9Y6I4 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 LINC00602-201ENST00000629776 2065 ntBASIC19.02■□□□□ 0.64
USP3Q9Y6I4 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 TPSP2-201ENST00000561760 610 ntBASIC19.02■□□□□ 0.64
USP3Q9Y6I4 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 AL353801.3-201ENST00000609898 542 ntBASIC19.02■□□□□ 0.64
USP3Q9Y6I4 AL592071.1-201ENST00000611956 408 ntBASIC19.02■□□□□ 0.64
USP3Q9Y6I4 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.02■□□□□ 0.64
USP3Q9Y6I4 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.02■□□□□ 0.64
USP3Q9Y6I4 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP3Q9Y6I4 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
USP3Q9Y6I4 AL390961.4-201ENST00000623958 2535 ntBASIC19.02■□□□□ 0.63
USP3Q9Y6I4 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
USP3Q9Y6I4 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
USP3Q9Y6I4 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 KRT18P1-202ENST00000452408 1331 ntBASIC19.01■□□□□ 0.63
USP3Q9Y6I4 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 HCG4P8-203ENST00000443049 980 ntBASIC19.01■□□□□ 0.63
USP3Q9Y6I4 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 AC092329.2-201ENST00000598402 547 ntBASIC19.01■□□□□ 0.63
USP3Q9Y6I4 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.01■□□□□ 0.63
USP3Q9Y6I4 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms