Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 GPAT2P1-201ENST00000444924 1672 ntBASIC14.78□□□□□ -0.04
FOXA2Q9Y261 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 KRT8P50-201ENST00000562022 1438 ntBASIC14.78□□□□□ -0.04
FOXA2Q9Y261 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 AC145285.6-201ENST00000604632 637 ntBASIC14.78□□□□□ -0.04
FOXA2Q9Y261 AC010653.2-201ENST00000623505 997 ntBASIC14.78□□□□□ -0.04
FOXA2Q9Y261 AC133561.5-201ENST00000635547 218 ntBASIC14.78□□□□□ -0.04
FOXA2Q9Y261 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 AC020916.1-201ENST00000587762 1774 ntBASIC14.78□□□□□ -0.04
FOXA2Q9Y261 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 AC134043.2-201ENST00000624206 2238 ntBASIC14.77□□□□□ -0.04
FOXA2Q9Y261 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 AC092338.2-201ENST00000568827 1415 ntBASIC14.77□□□□□ -0.04
FOXA2Q9Y261 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA2Q9Y261 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 AC007663.1-201ENST00000438948 1240 ntBASIC14.77□□□□□ -0.05
FOXA2Q9Y261 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 OR6D1P-202ENST00000641007 5290 ntBASIC14.77□□□□□ -0.05
FOXA2Q9Y261 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA2Q9Y261 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 GXYLT1P6-201ENST00000456472 1187 ntBASIC14.76□□□□□ -0.05
FOXA2Q9Y261 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC14.76□□□□□ -0.05
FOXA2Q9Y261 AP003041.3-201ENST00000527151 707 ntBASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms